Bioinformatics Jobs

Why Mayo Clinic Mayo Clinic is top-ranked in more specialties than any other care provider according to U.S. News & World Report. As we work together to put the needs of the patient first, we are also dedicated to our employees, investing in competitive compensation and comprehensive benefit plans – to take care of you and your family, now and in the future. And with continuing education and advancement opportunities at every turn, you can build a long, successful career with Mayo Clinic. Benefits Highlights • Medical: Multiple plan options. • Dental: Delta Dental or reimbursement account for flexible coverage. • Vision: Affordable plan with national network. • Pre-Tax Savings: HSA and FSAs for eligible expenses. • Retirement: Competitive retirement package to secure your future. Responsibilities A Research Fellow opportunity is available under the mentorship of Dr. Arjun Athreya in the Department of Molecular Pharmacology and Experimental Therapeutics. The successful candidate will work in bioinformatics research in a multi-omic integration program. Applicants who apply should have a strong background in bioinformatics skills, as well as excellent verbal and written skills. A Research Fellow in Bioinformatics/Biostatistics (BST) will have a primary focus in developing software and research techniques and/or tools to analyze and then aid in understanding biological data. Responsibilities and skills required involve computer programming, calculating statistics related to biological information, and mathematics. A Research Fellow at Mayo Clinic is a temporary position intended to provide training and education in research. Individuals will train in the research program of a Mayo Clinic principal investigator. Qualified individuals will demonstrate the potential for research as evidenced by their training and peer-reviewed publications and should become competitive for national research grants. Proof of English proficiency is required for J-1 Short-Term Scholars, Research Scholars, Professors, Specialists, and Student Interns sponsored by Mayo Clinic. To learn more about the exciting research being done on Mayo Clinic’s campuses, please visit Research at Mayo Clinic - Mayo Clinic Research. Applicants may search for research postdoc opportunities here: jobs.mayoclinic.org/post-doctoral-jobs. Qualifications Must have a Ph.D., M.D., or equivalent doctoral degree in a field deemed relevant by the program. Research Fellow is appropriate for individuals who have completed no more than one prior postdoctoral fellowship, at Mayo Clinic or elsewhere. Exemption Status Exempt Compensation Detail $68,564 - $80,210 / year; Education, experience and tenure may be considered along with internal equity when job offers are extended. Benefits Eligible Yes Schedule Full Time Hours/Pay Period 80 International Assignment No Site Description Just as our reputation has spread beyond our Minnesota roots, so have our locations. Today, our employees are located at our three major campuses in Phoenix/Scottsdale, Arizona, Jacksonville, Florida, Rochester, Minnesota, and at Mayo Clinic Health System campuses throughout Midwestern communities, and at our international locations. Each Mayo Clinic location is a special place where our employees thrive in both their work and personal lives. Learn more about what each unique Mayo Clinic campus has to offer, and where your best fit is. Equal Opportunity All qualified applicants will receive consideration for employment without regard to race, color, religion, sex, gender identity, sexual orientation, national origin, protected veteran status or disability status. Learn more about the 'EOE is the Law'. Mayo Clinic participates in E-Verify and may provide the Social Security Administration and, if necessary, the Department of Homeland Security with information from each new employee's Form I-9 to confirm work authorization. Recruiter Kara Schott

At Cleveland Clinic Health System, we believe in a better future for healthcare. And each of us is responsible for honoring our commitment to excellence, pushing the boundaries and transforming the patient experience, every day. We all have the power to help, heal and change lives — beginning with our own. That’s the power of the Cleveland Clinic Health System team, and The Power of Every One. Job TitleBioinformatics Technologist LocationCleveland FacilityCleveland Clinic Main Campus DepartmentLRI Inflammation and Immunity-Research Innov and Educ Job CodeT98393 ShiftDays Schedule8:00am-5:00pm Job Summary Job Details Join Cleveland Clinic’s Lerner Research Institute and become a part of one of the most respected healthcare organizations in the world. Lerner Research Institute embodies Cleveland Clinic’s values of research, innovation and education by conducting leading-edge research that improves the lives of patients today and in the future. Here, you will work alongside passionate and dedicated caregivers, receive endless support and appreciation and build a rewarding career. The Department of Inflammation & Immunity advances scientific understanding by bringing together a dedicated and collaborative team of scientists at the forefront of immunologic and organ-based research, to deliver impactful translational science that improves the health and well-being of patients at Cleveland Clinic and across the globe. As a Bioinformatics Technologist, you will: • Perform software programming in various languages. • Maintain and run software systems for bioinformatics analysis, including raw data quality control, sequence alignment, variant calling, annotation, and reporting. • Provide input to develop software and data analysis solutions. • Complete department tasks. • Provide ongoing support for existing databases/software. The ideal future caregiver is someone who: • Has experience in DNA and RNA sequence data analysis • Has experience with single-cell RNA sequencing data. • Has a bachelor’s degree in systems biology, bioinformatics, computer science or a related field. • Demonstrates a strong work ethic. In this role, you will work in a dynamic and technologically advanced environment that allows you to discover, learn and grow. You’ll remain professionally challenged as you shape the career of your dreams and find where you belong, here at Cleveland Clinic. At Cleveland Clinic, we know what matters most. That's why we treat our caregivers as if they are our own family, and we are always creating ways to be there for you. Here, you'll find that we offer: resources to learn and grow, a fulfilling career for everyone, and comprehensive benefits that invest in your health, your physical and mental well-being and your future. When you join Cleveland Clinic, you'll be part of a supportive caregiver family that will be united in shared values and purpose to fulfill our promise of being the best place to receive care and the best place to work in healthcare. Responsibilities: • Assists with testing hypotheses. • Develops basic statistical, mathematical, and predictive modeling as well as building algorithms and performing data analytics. • In collaboration with bioinformatics specialists, maintains and runs, software systems for bioinformatics processing of sequence data, including, but not limited to, raw data quality control, sequence alignment, variant calling, annotation, and reporting. • Develops and implements workflows for data analysis tools in collaboration with research scientists. • Builds and deploys data analysis support systems for large data sets; e.g., well-structured flat files, APIs, or other types of services. • Acquires, cleans, and structures data from multiple sources to ensure data quality. • Utilizes process enhancement opportunities to improve efficiency of data pulling, reporting, programming, operation, etc. • Other duties as assigned. Education: • Bachelor's Degree in Systems Biology, Bioinformatics, Computer Science or related field (such as Mathematics, Physics, Biology, Business Intelligence). Languages: • N/A Certifications: • None required Complexity of Work: • Requires critical thinking skills, decisive judgment, and the ability to work with minimal supervision. • Must be able to work in a stressful environment and take appropriate action. • Ability to participate within a multidisciplinary team of IT professionals, physicians, molecular biologists, computer scientists, and biostatisticians. Work Experience: • Must possess knowledge of conducting data analytics, math or statistical modeling or machine learning. • Experience in bioinformatics software. • Detailed knowledge of core bioinformatics concepts and skills • Proficiency in interpreted languages; Python or Perl preferred. • Experience or willingness to learn R for specialized tasks and integration with data analytics workflows. • Experience producing useful code (not necessarily in context of employment - personal projects or contributions to open-source projects are applicable). • Experience with high performance computing cluster preferred. • Demonstrated experience in communication/presentation skills. Physical Requirements: Ability to perform work in a stationary position for extended periods. Ability to travel throughout the hospital system. Ability to operate a computer and other office equipment. Ability to communicate and exchange accurate information. Personal Protective Equipment: • Follows Standard Precautions using personal protective equipment. The policy of Cleveland Clinic Health System and its system hospitals (Cleveland Clinic Health System) is to provide equal opportunity to all of our caregivers and applicants for employment in our tobacco free and drug free environment. All offers of employment are followed by testing for controlled substance and nicotine. All offers of employment are follwed by testing for controlled substances and nicotine. All new caregivers must clear a nicotine test within their 90-day new hire period. Candidates for employment who are impacted by Cleveland Clinic Health System's Smoking Policy will be permitted to reapply for open positions after one year. Cleveland Clinic Health System administers an influenza prevention program. You will be required to comply with this program, which will include obtaining an influenza vaccination on an annual basis or obtaining an approved exemption. Decisions concerning employment, transfers and promotions are made upon the basis of the best qualified candidate without regard to color, race, religion, national origin, age, sex, sexual orientation, marital status, ancestry, status as a disabled or Vietnam era veteran or any other characteristic protected by law. Information provided on this application may be shared with any Cleveland Clinic Health System facility. Please review the Equal Employment Opportunity poster. Cleveland Clinic Health System is pleased to be an equal employment employer: Women / Minorities / Veterans / Individuals with Disabilities

Overview Fred Hutchinson Cancer Center is an independent, nonprofit organization providing adult cancer treatment and groundbreaking research focused on cancer and infectious diseases. Based in Seattle, Fred Hutch is the only National Cancer Institute-designated cancer center in Washington. With a track record of global leadership in bone marrow transplantation, HIV/AIDS prevention, immunotherapy and COVID-19 vaccines, Fred Hutch has earned a reputation as one of the world’s leading cancer, infectious disease and biomedical research centers. Fred Hutch operates eight clinical care sites that provide medical oncology, infusion, radiation, proton therapy and related services, and network affiliations with hospitals in five states. Together, our fully integrated research and clinical care teams seek to discover new cures to the world’s deadliest diseases and make life beyond cancer a reality. At Fred Hutch we value collaboration, compassion, determination, excellence, innovation, integrity and respect. Our mission is directly tied to the humanity, dignity and inherent value of each employee, patient, community member and supporter. Our commitment to learning across our differences and similarities make us stronger. We seek employees who bring different and innovative ways of seeing the world and solving problems. The Bioinformatics Analyst III will provide data analysis services to researchers in the Fred Hutch Clinical Testing Labs - Molecular OncologyXXXX lab, particularly focusing on molecular, single cell genomics, integration of high-dimensional immunologic data and genome sequencing. This position requires the ability to work independently, manage multiple overlapping demands, and communicate effectively with faculty, lab managers, lab staff, staff scientist, and research staff on a wide range of topics in biology, analytical biochemistry, sound experimental design, and data science. The Bioinformatics Analyst will work closely with the medical director, clinical laboratory director, and MO staff for clinical variant analysis as well as development and execution of small programming and database projects related to the data analysis workflows needed for the Fred Hutch clinical testing labs. The BA is also expected to work closely with NIH teams, Fred Hutch IT teams, Shared Resources cores, especially Genomics and Hutch Data core, and as needed SWOG data teams, to ensure that data quality is high and that users have access to advice and continuing dialog as they review results. Given the large volumes and diverse types of data generated and integrated in Bioinformatics projects, practical applied programming skills are also essential. Responsibilities PRIMARY/ESSENTIAL DUTIES: • Supports the maintenance of computational infrastructure and the flow of samples and information for large-scale studies in compliance with applicable FDA, NYS-DOH, CLIA, and CAP regulations. • Contribute to web-based bioinformatics (both public and internal relational databases), and assists in the development as well as the application of computational tools. • Interpret complex biological information, conduct statistical and genomic analysis. • Write custom scripts to access databases, perform and evaluate quality control and analyze sequencing data (must be proficient with NGS, LRS data would be a desirable skill). • Assist in the development and refinement of data analysis and integration methodology and pipelines. Must have ability to write scripts automating data transfers to and from AWS and other databases, and can incorporate API. • Analyze large sequence datasets from diverse workflows including exome capture, RNA-seq, single cell sequencing, ATAC-seq, and CRISPR screens. • Work with Hutch scientists to refine computational research questions and develop analytical processes that can be applied to these genomic datasets. • Consult with researchers on sound experimental design. • Identify appropriate bioinformatics tools to meet the needs of proposed projects. • Partner with researchers who are developing novel assays to design appropriate processing and analysis workflows. • Review current literature to identify and adopt software and methodologies, making new analysis capabilities available to the team. • Provide figures and written sections to document methods and results for manuscripts, presentations, and grant applications. • Collaborate with colleagues in the Genomics Shared Resource and the Hutch Data Core to ensure the integrity and consistency of primary data, track experimental methods and metadata, define standardized analysis pipelines, and provide support as stakeholders analyze and interpret results. • Train laboratory members and collaborators on analytic workflows. • Upload and maintain datasets, workflows, and code (for example GEO, Github). • Excellent written and oral communication skills - required for manuscripts, grant, presentation, preparation. • Candidate must demonstrate outstanding personal initiative and creativity in problem solving. • Other duties as assigned. SCOPE OF RESPONSIBILITY: • Level of autonomy: A senior level position that works under minimal supervision, works on and completes complex projects requiring advanced knowledge and skills. Ability to conduct clinical variant analysis as part of the clinical data review team, manage multiple overlapping demands, work independently as well as balance their own schedules, and communicate effectively with faculty, managers, lab staff, and research staff on a wide range of topics in molecular biology, analytical biochemistry, sound experimental design, and data science. • Financial responsibility: None Qualifications MINIMUM QUALIFICATIONS: • Bachelor’s degree in bioinformatics, computational biology, genetics, or related field. • At least three years’ direct experience in computational analysis of large, complex sequence-based molecular data sets. • Two+ years of experience in software development, data engineering, data science, or related field with a track record of manipulating, processing, and extracting value from large datasets. • Direct experience must include whole exome sequencing, analysis of bulk RNA-seq data with multiple contrasts, analysis of multimodal single-cell immune repertoire profiling data, gene set enrichment, and integration of data across multiple modalities (e.g., epigenetic profiling, TCR-seq, CITE-seq, ChIP-seq, ATAC-seq, and CRISPR/Cas9 knockout screens). • Demonstrated fluency in R and Python 3 are essential. • Proficiency with Linux/Unix shell scripting (e.g., bash). • Facility with commonly used Bioconductor packages, ggplot, tidyverse etc. • Ability to generate and customize common data visualizations (PCA plots, volcano plots, Circos plots, etc). • Familiarity with workflow and scheduling software (e.g., Slurm). • Excellent written and verbal communication skills. PREFERRED QUALIFICATIONS: • Master’s degree in bioinformatics, computational biology, genetics, or related field. • Experience handling data in compliance with FDA, NYS-DOH, CAP, and CLIA regulations. The annual base salary range for this position is from $95,888 to $143,811, and pay offered will be based on experience and qualifications.Fred Hutchinson Cancer Center offers employees a comprehensive benefits package designed to enhance health, well-being, and financial security. Benefits include medical/vision, dental, flexible spending accounts, life, disability, retirement, family life support, employee assistance program, onsite health clinic, tuition reimbursement, paid vacation (12-22 days per year), paid sick leave (12-25 days per year), paid holidays (13 days per year), paid parental leave (up to 4 weeks), and partially paid sabbatical leave (up to 6 months). Additional Information We are proud to be an Equal Employment Opportunity (EEO) and Vietnam Era Veterans Readjustment Assistance Act (VEVRAA) Employer. We do not discriminate on the basis of race, color, religion, creed, ancestry, national origin, sex, age, disability (physical or mental), marital or veteran status, genetic information, sexual orientation, gender identity, political ideology, or membership in any other legally protected class. We desire priority referrals of protected veterans. If due to a disability you need assistance/and or a reasonable accommodation during the application or recruiting process, please send a request to Human Resources at hrops@fredhutch.org or by calling 206-667-4700.

Current Employees: If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review this tip sheet. The UHealth System at the University of Miami has an exciting opportunity for a Bioinformatics Analyst in the Radiation Oncology Department. SUMMARY The Bioinformatics Analyst works with research staff to extend capabilities in bioinformatics and improve understanding of genetic variation in human health and disease. The Bioinformatics Analyst maintains and performs analysis with existing pipelines while assisting and benchmarking the development of novel methods. CORE JOB FUNCTIONS • Runs and maintains existing next generation data analysis pipelines. • Assists senior bioinformatics analysts in pipeline and algorithm development and validation. • Extracts features of interest from data relating to specific biological questions. • Contributes to the maintenance of genomic and clinical databases. • Performs statistical and integrative data analysis on genomics and clinical data. • Works along-side other team members and data analysts. • Follows standard operating procedures, documentation, and scripts to generate reports. • Adheres to University and unit-level policies and procedures and safeguards University assets. This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. CORE QUALIFICATIONS Education: Bachelor’s degree in relevant field Experience: Minimum 1 year of relevant experience Knowledge, Skills and Attitudes: • Skill in collecting, organizing, and analyzing data. • Ability to recognize, analyze, and solve a variety of problems. • Ability to exercise sound judgment in making critical decisions. • Ability to process and handle confidential information with discretion. • Proficiency in computer software. The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more. UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for. The University of Miami is an Equal Opportunity Employer - Females/Minorities/Protected Veterans/Individuals with Disabilities are encouraged to apply. Applicants and employees are protected from discrimination based on certain categories protected by Federal law. Click here for additional information. Job Status: Full time Employee Type: Staff Pay Grade: A9

A Bioinformatics Research Scientist position is immediately available under the supervision of Dr. Zhaoming Wang in the Department of Epidemiology and Cancer Control at St. Jude Children’s Research Hospital. Wang Lab is seeking a talented and highly motivated data scientist to apply established and innovative approaches towards analyzing multi-omics data to discover potential biomarkers for risk of chronic health conditions including second cancers among long-term survivors of childhood cancer. In addition to large-scale molecular profiling data encompassing genome, epigenome, and transcriptome, we also have access to rich longitudinal clinical data from the two largest cohorts of childhood cancer survivors: St. Jude Lifetime Cohort and Childhood Cancer Survivor Study. Strong expertise in R and/or Python programming is required. Extensive working experience in next-generation sequencing analysis and domain knowledge in one or more of bioinformatics, biostatistics and genetic/molecular epidemiology are highly desired. The ability to work independently and in a team-setting (multi-tasking and effective communications) is also essential. The Wang Lab is currently focused on cancer genetics (pediatric cancers, subsequent adult cancers), aging biomarkers (telomere, epigenetic age, clonal hematopoiesis), and multi-omics integrative analysis (including single-cell approaches). Job Responsibilities: • Work closely with Dr. Wang and others with the overarching goal of contributing to the clinical research by melding multi-omics data with clinical/phenotypic data for discoveries in the area of precision preventive medicine for survivorship care. • Contribute to multi-omics data management and primary sequencing data analysis by setting up/improving automation pipeline with established computational methods. • Lead the development of analytical workflows (secondary analyses) for assigned research projects. • Learn new bioinformatics techniques for data mining in molecular phenotyping (e.g., deconvolution analysis, mosaicism detection, HLA imputation) • Contribute to the preparation and submission of manuscripts for publication. • Present to collaborators and team members to report scientific discoveries and educate researchers about relevant methods, software or scientific results. • Perform other duties as assigned to meet the goals and objectives of the department and institution. Minimum Education and/or Training: • Bachelor's degree in bioinformatics, cheminformatics, statistics/computer science (with a background in biological sciences or chemistry) or related field. • Master's degree or PhD preferred. Minimum Experience: • Minimum Requirement: Bachelor's degree with 6+ years of relevant post-degree work in bioinformatics, cheminformatics, statistics/computer science (with a background in biological sciences or chemistry). • Experience Exception: Master's degree with 4+ years of relevant post-degree experience (OR) PhD with no experience. • Experience in at least one programming or scripting language and at least one statistical package, with R preferred. Compensation In recognition of certain U.S. state and municipal pay transparency laws, St. Jude is including a reasonable estimate of the compensation range for this role. This is an estimate offered in good faith and a specific salary offer takes into account factors that are considered in making compensation decisions including but not limited to skill sets, experience and training, licensure and certifications, and other business and organizational needs. It is not typical for an individual to be hired at or near the top of the salary range and compensation decisions are dependent on the facts and circumstances of each case. A reasonable estimate of the current salary range is $86,320 - $154,960 per year for the role of Bioinformatics Research Scientist - Dr. Zhaoming Wang. Explore our exceptional benefits! St. Jude is an Equal Opportunity Employer No Search Firms St. Jude Children's Research Hospital does not accept unsolicited assistance from search firms for employment opportunities. Please do not call or email. All resumes submitted by search firms to any employee or other representative at St. Jude via email, the internet or in any form and/or method without a valid written search agreement in place and approved by HR will result in no fee being paid in the event the candidate is hired by St. Jude.

At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect change at a rate unheard of in many organizations of our size and scope. While we invest in and develop technology to drive our innovations, our ongoing success relies on our people. Quest Diagnostics Specialty Genetics products provide specific answers that clinicians need to deliver the appropriate diagnostic and prognostic care to their patients. You will work for the world leader in the industry, with a career where you will have the opportunity to collaborate and affect change while expanding your leadership skills and technical knowledge. You can make a real impact in a market that is growing and developing. Bioinformatics, US Operations – the role As a Bioinformatics Engineer, you will work for the world leader in the industry, with a career where you will have the opportunity to collaborate and affect change while expanding your leadership skills and technical knowledge. You can make a real impact in a market that is growing and developing. This position is in our Bioinformatics Operations group, part of the Research and Development organization, in Advanced Diagnostics based in Marlborough, MA. The team supports genetic/genomic testing in a highly regulated CAP/CLIA laboratory environment primarily using short and long-read sequencing as the basis of evidence. The right candidate will know how to balance innovation, standards, and quality with a practical understanding of when each is appropriate. The Bioinformatics Operations group supports, hones, and executes the processes defined by our Engineering and Lab Operations groups with emphasis on compliance and continuous improvement. While coupled tightly to regulation through standards in validation, documentation, and data retention, the group is an integral part of the development cycle of our analysis workflows and visualization. This position is 100% remote and the professional must be located in the US. • Execute and improve sequence analysis workflows and automation • Track, troubleshoot and mitigate issues encountered in processing production samples • Assist in planning and development of solutions to recurring issues to be merged back into development branch maintained by the Engineering group • Develop web-based results display and dashboards for clinical geneticists, medical directors and operations lab personnel providing clarity in our process • Generate, wrangle, merge and glean information from varied and complex data sets Design and implementation of RESTful APIs linked to various systems including LIMS, AWS job runners and other systems necessary for data processing and execution • Design and perform validation, testing, and production deployment of systems and software to standardize processes across all Quest Diagnostics genetic testing labs • Design and perform validation analysis for new genomic testing products. • Support production day-to-day operations • Write and maintain production documentation for compliance and supportability of all bioinformatics processes in production environment • Work directly with medical/quality/compliance to identify, track, resolve and report on any relevant quality-related issues • Produce charts and visualization for dashboards, reporting, and in support of data driven hypothesis testing • Perform LIS support duties (maintain database for user, tests, clients….) • Support interface, integration, and testing projects • Utilize a Software Development Life Cycle documentation procedure • Be an active team player and support the group • Accept input on solutions from other colleagues and teams • * 5 years experience using formal programming and scripting languages • 5 years experience working on a Linux command-line to process, parse, and merge varied data sets • 2 years experience working with web services and implementing API communications (REST, SOAP, etc.) • 3 years experience in a distributed HPC environment (cluster, cloud) • Knowledge and understanding of genomics, next-generation sequencing, and bioinformatics • Experience developing and testing software • Experience with source control in a development, testing, and production environment • Automated testing experience; CI/CD experience preferred • Knowledge of CAP documentation requirements a plus • Experience communicating technical results and data is desirable Current tech stack experience is a plus Examples: • Programming Languages: Python, PERL, Groovy, javascript, terraform • Web Frameworks: Python Flask, React Native, Bootstrap • Environments: R Statistical Language, iPython, Jupyter • Visualization: Plotly, matplot lib, ggplot2/tidyverse, Tableau, d3.js • Database: SQL (e.g., postgress, MySQL), MongoDB • Cloud Computing: AWS • Infrastructure management: terraform • Pipeline Workflow Manager: Nextflow • Source Control: Git • CI/CD: Gitlab, AWS CDK • Containerizing: Docker • Microsoft UI: Access, VBA, Macros Education: Bachelor’s Degree - Required Master’s Degree or PhD - Preferred Equal Opportunity Employer: Race/Color/Sex/Sexual Orientation/Gender Identity/Religion/National Origin/Disability/Vets or any other legally protected status.

Understanding the location and functions of genes within an organism's genome is useful for scientists to learn more about the relationship between organisms. We look at several features of fruit fly genomes as part of the Genomics Education Partnership. We use online software to make judgements about start and stop sites on exons within the genomes. Students can participate remotely, though sessions with the PI are needed for training and initial workthroughs.

The Department of Pathology at The Ohio State University Wexner Medical Center (OSUWMC) and the James Cancer Hospital Molecular Laboratory is seeking a Director of Clinical Bioinformatics at the Associate or Full Professor rank. Expertise in the areas of clinical bioinformatics and genomics is essential. Research interests in machine learning, artificial intelligence, digital spatial profiling, or the integration of genomics and digital pathology is preferred. Qualified applicants must possess an MD, MD-equivalent, PhD or MD/PhD degree, with relevant clinical board certification/ eligibility or clinical bioinformatic/informatics certification/ eligibility. The ability to conduct independent research is required and a history of obtaining competitive grant funding is desirable. Requirements: • Relevant practical experience in clinical bioinformatics, with prior experience in supervising variant scientists or annotators desirable • Well-developed interests in translational or basic research in clinical bioinformatics or genomics • Qualify for an academic appointment at the associate or full professor level – Academic rank and salary will be commensurate with previous training and experience This role will: • Oversee the clinical genomics laboratory staff of PhD bioinformaticians and masters-level variant scientists • Lead and support a research program on clinical or translational bioinformatics/genomics • Help create bioinformatic pipelines or novel software tools in genomic/computational pathology • Work with the molecular pathologists and clinical laboratory directors on automated data-driven workflows for clinical genomics or integrated pathology-genomics signouts • Molecular pathology signout, if applicable, based on training and certifications • Represent the pathology faculty in cancer center or institutional initiatives in genomics and bioinformatics • Serve as a mentor to graduate students, PhD candidates, medical students and other trainees

Payroll Title: BIOINFORMATICS PROGR 3 Department: MEDICINE/ Biomedical Informatics Hiring Pay Scale $94,400 - $123,000/YR. Worksite: East Campus (La Jolla) Appointment Type: Career Appointment Percent: 100% Union: Uncovered Total Openings: 1 Work Schedule: Days, 8 hrs/day, Monday-Friday #135391 Bioinformatics Programmer Filing Deadline: Tue 6/3/2025 Apply Now UC San Diego values equity, diversity, and inclusion. If you are interested in being part of our team, possess the needed licensure and certifications, and feel that you have most of the qualifications and/or transferable skills for a job opening, we strongly encourage you to apply. This is a UC San Diego Internal Recruitment open to UCSD and UCSD Health System Staff Only UCSD Layoff from Career Appointment: Apply by 05/16/2025 for consideration with preference for rehire. All layoff applicants should contact their Employment Advisor. Special Selection Applicants: Apply by 05/21/2025. Eligible Special Selection clients should contact their Disability Counselor for assistance. DESCRIPTION Biomedical Informatics is an interdisciplinary field at the intersection of biology, medicine, and quantitative sciences. Biomedical Informatics researchers develop new methods to integrate and analyze vast amounts of data generated in the laboratory, clinical and translational research, clinical encounters, and population studies. The goals of the Department of Biomedical Informatics (DBMI) are to (1) promote excellence in biomedical informatics research, (2) collaborate with biomedical researchers in developing new quantitative methods that enable the formulation and testing of original hypotheses, (3) train the next generation of biomedical informatics specialists, and (4) interface with engineering, mathematics, information and computer science communities, serving as a hub for quantitative scientists focused on biomedical research. This department leads multiple federally and non-profit funded biomedical research projects, which are focused on the integration, analysis, and sharing of biomedical and health care data for the scientific community, as well as patient-centered research. In addition, the department runs a complex computational infrastructure that allows access and analysis of these data in a privacy-preserving manner. Under general supervision, applies machine learning and deep learning, and mission-critical healthcare real-time artificial Intelligence software development. This involves in-depth evaluation of variable factors impacting medium to large healthcare integration and implementation science projects of broad scope and complexities. Independently determines research and development projects and communicates project plans, milestones, and key performance indicators with team-members and executive-level management. Designs, develops, and optimizes components / tools for major high performance computing (HPC) applications, using cloud computing, and involving hundreds to thousands of hospital beds. May manage a team of data scientists and IT experts to integrate with existing electronic medical records and bedside devices, based on interoperability standards such as FHIR and C-CDA. May manage one or more team of research staff and engineers through the design, implementation, evaluation and continuous improvement cycle. Gives technical presentations to associated hospital IT leadership, clinical, and administrative leadership. Evaluates new hardware and software technologies for scalable and fault-tolerant deployment of clinical grade artificial intelligence clinical decision support systems. May organize and represent the organization at national and international critical care and machine learning/artificial intelligence conferences. Directs a team of engineers to ensure implementation and compliance with quality management systems. Leads a team of engineers to prepare submissions for FDA regulatory approval of software as a medical device. Uses skills as a seasoned, experienced bioinformatics programming professional with a broad understanding of computational algorithms and systems; identifies and resolves a wide range of issues / software bugs. Demonstrates good judgment in selecting methods and techniques for obtaining solutions. Operates independently. MINIMUM QUALIFICATIONS • Seven years of related experience, education/training, OR an Bachelor’s degree in related area plus three years of related experience/training. • Demonstrated experience working with Python, TensorFlow, PyTorch, Matlab. Must have experience with real-time implementation of artificial Intelligence clinical decision support systems and health care data exchange protocols such as HL7 and FHIR. • Experience working in a complex computing / data / CI environment encompassing all or some of the following: HPC, data science infrastructure and tools / software, and diverse domain science application base. • Demonstrated experience in one or more of the following: optimizing, benchmarking, HPC performance and power modeling, analyzing hardware, software, and applications for HPC / data / CI. • Experience with Graph Neural Networks, and Large Language Models, including Vector Databases. • Thorough knowledge of bioinformatics methods, applications programming, web development and data structures. Experience with Python, MATLAB, C. • Thorough knowledge of bioinformatics programming design, modification and implementation. • Understanding of relational databases, web interfaces, and operating systems. • Strong project management skills. • Thorough knowledge of modern biology and applicable field of research. • Communication skills to work with both technical and non-technical personnel in multiple fields of expertise and at various levels in the organization. • Ability to communicate technical information in a clear and concise manner. • Ability to interface with management on a regular basis. • Self motivated, work independently or as part of a team, able to learn quickly, meet deadlines and demonstrate problem solving skills. • Thorough knowledge of web, application and data security concepts and methods. PREFERRED QUALIFICATIONS • PhD degree in Computer / Computational / Data Science, or Domain Sciences with computer / computational / data specialization. SPECIAL CONDITIONS • Employment is subject to a criminal background check. Pay Transparency Act Annual Full Pay Range: $94,400 - $176,800 (will be prorated if the appointment percentage is less than 100%) Hourly Equivalent: $45.21 - $84.67 Factors in determining the appropriate compensation for a role include experience, skills, knowledge, abilities, education, licensure and certifications, and other business and organizational needs. The Hiring Pay Scale referenced in the job posting is the budgeted salary or hourly range that the University reasonably expects to pay for this position. The Annual Full Pay Range may be broader than what the University anticipates to pay for this position, based on internal equity, budget, and collective bargaining agreements (when applicable). Apply Now If employed by the University of California, you will be required to comply with our Policy on Vaccination Programs, which may be amended or revised from time to time. Federal, state, or local public health directives may impose additional requirements. If applicable, life-support certifications (BLS, NRP, ACLS, etc.) must include hands-on practice and in-person skills assessment; online-only certification is not acceptable. UC San Diego Health Sciences is comprised of our School of Medicine, Skaggs School of Pharmacy and Pharmaceutical Sciences, The Herbert Wertheim School of Public Health and Human Longevity Science, and our Student Health and Well-Being Department. We have long been at the forefront of translational - or "bench-to-bedside" - research, transforming patient care through discovery and innovation leading to new drugs and technologies. Translational research is carried out every day in the hundreds of clinical trials of promising new therapies offered through UC San Diego Health, and in the drive of our researchers and clinician-scientists who are committed to having a significant impact on patient care. 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Company Description AbbVie's mission is to discover and deliver innovative medicines and solutions that solve serious health issues today and address the medical challenges of tomorrow. We strive to have a remarkable impact on people's lives across several key therapeutic areas – immunology, oncology, neuroscience, and eye care – and products and services in our Allergan Aesthetics portfolio. For more information about AbbVie, please visit us at www.abbvie.com. Follow @abbvie on X, Facebook, Instagram, YouTube, LinkedIn and Tik Tok. Job Description At AbbVie the Genomics Research Center (GRC) is a center of excellence for genetics and genomics that works with both Discovery and Development. Within the GRC, the Department of Bioinformatics is responsible for data analysis and provides analytical insights for both internal and external data. The Neuroscience Bioinformatics group of the GRC bioinformatics team is partnering with the AbbVie Neuroscience department to leverage OMICS data and bioinformatics analysis to identify and develop innovative approaches and cutting-edge strategies to address brain disorders. We have an exciting opportunity for a Computational Biologist/Bioinformatician in the Neuroscience Bioinformatics group of the GRC, based in Lake County (North Chicago (IL)). The successful candidate will work closely with bioinformatics and wet-lab groups in North Chicago (IL), Cambridge (MA), Ludwigshafen (Germany) and to contribute to target and biomarker identification, validation, and project advancement by OMICS data analysis. Key Responsibilities • Develop and drive computational strategies for biomarker discovery and Precision medicine for early and late-stage projects with a focus on neurodegenerative disorders, psychiatric disorders, movement disorders and migraine. • Analyze and integrate genomics, transcriptomics, proteomics, and other OMICS data from consortia, collaborations, preclinical models, and clinical studies to enhance the understanding of disease mechanisms, target/biomarker identification/validation and patient stratification. • Evaluate, develop, and implement computational methods, pipelines and tools for data analysis and visualization. Interpret results and contribute to hypothesis generation. • Collaborate with disease biology experts, statisticians and bioinformaticians within AbbVie. Objectives, strategies, results, and interpretation are discussed in interdisciplinary and international teams. Qualifications • Bachelor’s Degree or equivalent education and typically, 10 years of experience, Master’s Degree or equivalent education and typically 8 years of experience, PhD and no experience necessary. • At least 4 years’ experience in hands-on analysis of OMICS data, optimally including genomics data analysis and at least two other OMICS technologies. • Fluency in one or more relevant programming languages, such as R or Python. • Very good communication skills demonstrated in inter-disciplinary teams. • Experience in basic Neuroscience research and/or Neuroscience drug discovery and/or pharmaceutical industry is a plus. • Experience with data analysis of clinical studies is a plus. • Options for remote and onsite work are discussed in the interview. Additional Information Applicable only to applicants applying to a position in any location with pay disclosure requirements under state or local law: ​​ • The compensation range described below is the range of possible base pay compensation that the Company believes in good faith it will pay for this role at the time of this posting based on the job grade for this position. Individual compensation paid within this range will depend on many factors including geographic location, and we may ultimately pay more or less than the posted range. This range may be modified in the future.​​ • We offer a comprehensive package of benefits including paid time off (vacation, holidays, sick), medical/dental/vision insurance and 401(k) to eligible employees.​​ • This job is eligible to participate in our short-term incentive programs. ​​ Note: No amount of pay is considered to be wages or compensation until such amount is earned, vested, and determinable. The amount and availability of any bonus, commission, incentive, benefits, or any other form of compensation and benefits that are allocable to a particular employee remains in the Company's sole and absolute discretion unless and until paid and may be modified at the Company’s sole and absolute discretion, consistent with applicable law. AbbVie is an equal opportunity employer and is committed to operating with integrity, driving innovation, transforming lives and serving our community.  Equal Opportunity Employer/Veterans/Disabled. US & Puerto Rico only - to learn more, visit https://www.abbvie.com/join-us/equal-employment-opportunity-employer.html US & Puerto Rico applicants seeking a reasonable accommodation, click here to learn more: https://www.abbvie.com/join-us/reasonable-accommodations.html