Bioinformatics Jobs

Current Employees:If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review this tip sheet. The University of Miami/UHealth Department of SCCC has an exciting opportunity for a Full Time Bioinformatics Analyst (Cheminformatics) to work the UHealth Medical Campus in Miami, FL 33146. CORE JOB SUMMARY The Bioinformatics Analyst works with research staff to extend capabilities in bioinformatics and improve understanding of genetic variation in human health and disease. The Bioinformatics Analyst maintains and performs analysis with existing pipelines while assisting and benchmarking the development of novel methods. CORE JOB FUNCTIONS ● Runs and maintains existing next generation data analysis pipelines. ● Assists senior bioinformatics analysts in pipeline and algorithm development and validation. ● Extracts features of interest from data relating to specific biological questions. ● Contributes to the maintenance of genomic and clinical databases. ● Performs statistical and integrative data analysis on genomics and clinical data. ● Works along-side other team members and data analysts. ● Follows standard operating procedures, documentation, and scripts to generate reports. ● Adheres to University and unit-level policies and procedures and safeguards University assets. This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. CORE QUALIFICATIONS Education: PhD degree in relevant field Experience: Minimum 1 year of relevant experience Knowledge, Skills and Attitudes: ● Skill in collecting, organizing, and analyzing data. ● Ability to recognize, analyze, and solve a variety of problems. ● Ability to exercise sound judgment in making critical decisions. ● Ability to process and handle confidential information with discretion. ● Proficiency in computer software. Department Specific Functions & Qualifications The Sylvester Comprehensive Cancer Center & the Department of Molecular and Cellular Pharmacology are actively seeking a full-time Bioinformatics / Cheminformatics Analyst to work on the UHealth campus in Downtown Miami. At Sylvester, we are at the cutting edge of healthcare innovation, leveraging artificial intelligence and machine learning to transform drug discovery and development. Our mission is to accelerate the delivery of therapeutic solutions to patients through state-of-the-art technology and groundbreaking research. The Analyst will leverage expertise in computational chemistry, bioinformatics, and AI to process and analyze large-scale biomedical, small molecule bioactivity, structural biology, image, and clinicogenomic datasets, integrating them with the Sylvester Data Portal. The successful candidate will work within an interdisciplinary team of research scientists, data engineers, and full-stack developers, using state-of-the-art software development practices to enhance the university’s research activities. Primary Responsibilities: ● Process and analyze large-scale multi-omics and drug discovery datasets (WES, WGS, bulk/single-cell RNA-Seq, ATAC-Seq, Drug Screening, CRISPR Screening). ● Develop and maintain production-grade pipelines for processing and analysis of diverse biomedical datasets. ● Develop visualization and bioinformatic analysis tools for exploring diverse biomedical data. ● Integrate developed tools and pipelines with Sylvester’s internal end-user data analytics platform. ● Apply state-of-the-art AI, bioinformatics, and biostatistics approaches to cancer precision medicine. ● Write standard operating procedures and other relevant documentation. ● Develop and apply AI/ML models for structure-based and ligand-based drug design. ● Utilize computational tools to predict and optimize pharmacokinetic (PK) and pharmacodynamic (PD) properties of drug candidates. ● Design and implement algorithms to identify novel drug candidates and elucidate their mechanisms of action. ● Integrate and analyze large-scale biological, chemical, and clinical datasets to extract insights and inform drug discovery decisions. ● Collaborate with cross-functional teams to advance drug discovery projects. ● Analyze and interpret PK/PD data using advanced statistical and modeling software. ● Stay updated with advancements in computational chemistry, AI, and bioinformatics. ● Contribute to the development of new computational tools and methodologies. ● Present findings to both technical and non-technical stakeholders. ● Participate in scientific discussions and strategy meetings, providing AI/ML expertise. ● Author scientific papers, reports, and patents related to AI/ML in drug discovery. Preferred Requirements ● PhD or MSc degree in computational chemistry, computational biology, medicinal chemistry, pharmaceutical sciences, computational sciences, or a related field. ● Fluency in R or Python and Unix (bash). ● Experience with analyzing and interpreting different omics and/or drug discovery datasets (WES, WGS, bulk/single-cell RNA-Seq, ATAC-Seq, Drug Screening, CRISPR Screening). ● Experience with using common open-source bioinformatics/NGS workflows (BWA, STAR, Picard, GATK, etc.). ● Familiarity with machine learning frameworks (e.g., Scikit-learn, TensorFlow, PyTorch), and developing and deploying machine learning models. ● Highly motivated, strong work ethic, and able to work independently and with a team. ● Excellent skills in communication, organization, and time management. Preferred Qualifications ● For Ph.D. holders: 0-3 years of relevant experience in computational chemistry, AI, and drug discovery. ● Deep expertise with chemical toolkits such as DeepChem, ChemAxon, OEChem, or RDKit. ● Familiarity with drug discovery databases (CTRP, GDSC, PRISM, CCLE, DepMap, LINCS) and publicly available clinicogenomic datasets (CPTAC, TCGA, AACR Project GENIE, etc.). ● Experience with Cloud Computing Environments (e.g., Azure). ● Familiarity with relational (e.g., PostgreSQL) and/or NoSQL databases (e.g., MongoDB). ● Familiarity with container technologies (e.g., Docker). ● Experience with Generative AI tools and techniques. ● Familiarity with High Performance Computing. ● Familiarity with version control (Git). #LI-YC1 The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more. UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for. The University of Miami is an Equal Opportunity Employer - Females/Minorities/Protected Veterans/Individuals with Disabilities are encouraged to apply. Applicants and employees are protected from discrimination based on certain categories protected by Federal law. Click here for additional information. Job Status: Full time Employee Type: Staff Pay Grade: A9

The Opportunity The Faculty Cluster Initiative (FCI) at the University of Central Florida (UCF) is recruiting for a 9-month tenured professor who will act as the lead for the Genomics and Bioinformatics Cluster (https://www.ucf.edu/research/genomics-bioinformatics/). This position has an anticipated start date of August 8, 2025. An ideal candidate should have a strong background in genomics and bioinformatics, and in computational approaches used to analyze large genomic datasets. The candidate should have demonstrable leadership experience, preferably with multidisciplinary teams, and a strong record of continual extramural funding. The new Genomics and Bioinformatics Cluster lead can join any of three host departments – The Burnett School of Biomedical Sciences (College of Medicine), Biology (College of Sciences), or Computer Science (College of Engineering and Computer Science); or be jointly appointed among them as appropriate to qualifications and interest. The cluster lead will be expected to develop a research program that strengthens their tenure home department and the cluster. UCF is one of the nation's largest universities with a diverse student body of approximately 68,000 students. UCF has grown substantially in size, quality, diversity, and reputation in its first 50 years. Today, the university offers 240 degree programs. UCF is an economic engine, attracting and supporting industries vital to the region's future while providing students with real-world experiences that help them succeed after graduation. Minimum Qualifications: A Ph.D. or equivalent Doctoral degree from an accredited institution in computer science, bioinformatics, computational biology, biological sciences, biomedical sciences, or a closely related discipline. Extensive experience in cutting-edge bioinformatics methods, with applications in biological sciences, biomedical sciences, or AI in medicine. A strong, consistent, and recent funding record from the NIH, NSF, or other equivalent agencies in genomics and bioinformatics and demonstrated leadership in interdisciplinary research and/or education programs, potentially evidenced by currently, or previously, having held a leadership position at one’s current, or a previous, academic institution. To be eligible for appointment as a tenured professor upon hire, the selected candidate must have a demonstrated record of teaching, research, service, and leadership commensurate with a tenured faculty appointment at the rank of professor, in the applicable tenure home. Evidence of such a record could be demonstrated by holding the rank of full professor at one’s current institution. Preferred Qualifications: The ideal candidate would also have proficient teaching skills and the capacity to communicate effectively with both graduate and undergraduate students, whether in large or small audiences. Additional Application Materials Required: UCF requires all applications and supporting documents to be submitted electronically through the Human Resources employment opportunities website, https://www.ucf.edu/jobs/. In addition to the online application, candidates should upload a cover letter, a current curriculum vitae, a statement of career goals no more than 3 pages discussing their research, teaching, and their vision to lead an interdisciplinary bioinformatics and genomics group, and a list with contact information for three (3) professional references. In the cover letter, candidates should address their background in genomics and bioinformatics, their leadership experiences, and should identify the anticipated department(s) for their potential tenure home. NOTE: Please have all documents ready when applying so they can be simultaneously uploaded. Once the online submission process is finalized, the system does not allow applicants to submit additional documents later. Questions regarding this search should be directed to Naya Ramirez, HR Partner, Search Committee Manager, at Nayade.Ramirez@ucf.edu; or to Maria Fernandez, Human Resources Coordinator III, Search Committee Manager, at Maria.Fernandez@ucf.edu. Review of applications will begin in October 2024 and continue until the position is filled. Special Instructions to the Applicants: N/A Job Close Date: Open until filled. Note to applicants: Please keep in mind that a job posted as ‘Open until filled’ may close at any time without notice. As such, we encourage you to submit your application and all required documentation as quickly as possible to ensure consideration for the posted position. Are you ready to unleash YOUR potential? As a next-generation public research university and Forbes-ranked top employer in Florida, we are a community of thinkers, doers, creators, innovators, healers, and leaders striving to create broader prosperity and help shape a better future. No matter what your role is, when you join Knight Nation, you’ll play an integral role at one of the most impactful universities in the country. You’ll be met with opportunities to connect and collaborate with talented faculty, staff, and students across 13 colleges and multiple campuses, engaging in impactful work that makes a positive difference. Your time at UCF will provide you with many meaningful opportunities to grow, you’ll work alongside talented colleagues on complex projects that will challenge you and help you gain new skills and you’ll have countless rewarding experiences that go well beyond a paycheck. Working at UCF has its perks! UCF offers: • Benefit packages, including Medical, Dental, Vision, Life Insurance, Flexible Spending, and Employee Assistance Program.  • Paid time off, including annual (12-month faculty) and sick time off and paid holidays. • Retirement savings options.  • Employee discounts, including tickets to many Orlando attractions.  • Education assistance. • Flexible work environment.  • And more…For more benefits information, view the UCF Employee Benefits Guide click here. Unless explicitly stated on the job posting, it is UCF’s expectation that an employee of UCF will reside in Florida as of the date the employment begins. Additional Requirements related to Research Positions: Pursuant to Florida State Statute 1010.35, prior to offering employment to certain individuals in research-related positions, UCF is required to conduct additional screening. Applicants subject to additional screening include any citizen of a foreign country who is not a permanent resident of the U.S., or who is a citizen or permanent resident but is affiliated with or has had at least 1 year of education, employment, or training in China, Cuba, Iran, Russia, North Korea, Syria, or Venezuela. The additional screening requirements only apply to research-related positions, including, but not limited to faculty, graduate positions, individuals compensated by research grants or contract funds, post-doctoral positions, undergraduate positions, visiting assistant professors, and visiting research associates. Department Office Of Research, Research Centers & Institutes, College Of Graduate Studies, And Burnett Honors College HR Business Center Work Schedule Varies Type of Appointment Regular Expected Salary Negotiable Equal Employment Opportunity Statement: The University of Central Florida is an Equal Opportunity/Affirmative Action Employer including Disabled/Vets. Click on UCF's Equal Opportunity Statement to view the President’s Statement. The UCF affirmative action plans for qualified individuals with disabilities and protected Veterans are available for inspection in the Office of Institutional Equity, Monday through Friday, from 9:00 a.m. to 5:00 p.m., upon request. As a Florida public university, UCF makes all application materials and selection procedures available to the public upon request. The University of Central Florida is proud to be a smoke-free campus and an E-Verify employer.

Current Employees: If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review this tip sheet. Microbiology & Immunology has an exciting opportunity for a full time Research Associate 3, SOM position. The incumbent assumes responsibility for the design and performance of research focused on the development of novel experimental therapies for human malignancies. The incumbent contributes to collaborations with scientists within the University of Miami or elsewhere. Moreover, this individual works as part of a team and assists with the maintenance of laboratory equipment, protocols, and supplies. CORE JOB FUNCTIONS • Maintains daily operations and performs procedures related to new and on-going research projects. • Assists with ordering, purchasing, and maintenance of all required reagents and supplies for laboratory activities, and monitors and maintains inventory of supplies and stocks. • Assists with the maintenance of institutional biosafety and animal care protocols, laboratory safety records, and standard operating procedures. • Performs and assists other research staff with standard laboratory techniques. • Develops, adapts, and implements new laboratory procedures. • Records, organizes, and writes up experimental results for submission of manuscripts and for scientific presentations. • Keeps abreast of latest literature in the field and searches for references to technical problems. • Maintains current knowledge of the methods and techniques related to the specific field of research. • Adheres to University and unit-level policies and procedures and safeguards University assets. This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. CORE QUALIFICATIONS • Bachelor’s Degree in relevant field • Minimum 5 years of relevant experience DEPARTMENT ADDENDUM Department Specific Functions • Design and apply bioinformatics algorithms including unsupervised and supervised machine learning, dynamic programming, or graphic algorithms. • Compile data for use in activities such as gene expression profiling, genome annotation, and structural bioinformatics • Create novel computational approaches and analytical tools as required by research goals • Work with lab team to analyze problems, recommend technology-based solutions, or determine computational strategies. • Create or modify web-based bioinformatics tools and train personnel in technical or scientific procedures. • Prepare scientific or technical reports or presentations #LI-GD1 The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more. UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for. The University of Miami is an Equal Opportunity Employer - Females/Minorities/Protected Veterans/Individuals with Disabilities are encouraged to apply. Applicants and employees are protected from discrimination based on certain categories protected by Federal law. Click here for additional information. Job Status: Full time Employee Type: Staff Pay Grade: A7

PhD. candidates are requested not to apply. • A lot of it will be working with next-generation sequencing, running some pipelines to bring the data in-house, running some preliminary analyses to identify gene expression. There may also be some work involved in web application development, though that's going to be more of a minor role. • Ideally, we'd have someone who also has familiarity with single-cell analyses as well, and then truly ideal would be to have spatial data as well. • We want someone who has Python or R. Maybe it's possible that they have a Shiny experience, pipelining experience, things like Nextflow. One of the wish list things that, again, it's not required, it's just desired is experience applying, not necessarily generating new, but large language model approaches to data analysis. • No Phd Candidates - Concern with a PhD candidate would be that it might not fulfill all their desires forward. • Fluency in data visualization methods like R shiny - is that the most important and critical part of the job role? - No, it would be more of a second tier level of experience. Just ways of visualizing data is nice. Experience with Shiny is nice. Not required, • Would you consider someone with a master's degree and academic experience? –Yes but preference will be given with Pharma company experience. • Someone who's done a lot of NGS work, particularly with pipelines and developing, running the next flow and pipelines, and if they had some of these more advanced skills like single cell or spatial or LLMs, those would stand out, if they had those first skills to begin with, because that'll be the major part of the duties is doing some of supporting us with bringing in expression sets and running some simple analyses in that. Job Type: Contract Pay: $52.00 - $55.00 per hour Schedule: • Monday to Friday Work Location: Remote

Current Employees: If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review this tip sheet. The University of Miami/UHealth Department of SCCC has an exciting opportunity for a Full Time Bioinformatics Analyst (Cheminformatics) to work the UHealth Medical Campus in Miami, FL 33146. CORE JOB SUMMARY The Bioinformatics Analyst works with research staff to extend capabilities in bioinformatics and improve understanding of genetic variation in human health and disease. The Bioinformatics Analyst maintains and performs analysis with existing pipelines while assisting and benchmarking the development of novel methods. CORE JOB FUNCTIONS ● Runs and maintains existing next generation data analysis pipelines. ● Assists senior bioinformatics analysts in pipeline and algorithm development and validation. ● Extracts features of interest from data relating to specific biological questions. ● Contributes to the maintenance of genomic and clinical databases. ● Performs statistical and integrative data analysis on genomics and clinical data. ● Works along-side other team members and data analysts. ● Follows standard operating procedures, documentation, and scripts to generate reports. ● Adheres to University and unit-level policies and procedures and safeguards University assets. This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. CORE QUALIFICATIONS Education: PhD degree in relevant field Experience: Minimum 1 year of relevant experience Knowledge, Skills and Attitudes: ● Skill in collecting, organizing, and analyzing data. ● Ability to recognize, analyze, and solve a variety of problems. ● Ability to exercise sound judgment in making critical decisions. ● Ability to process and handle confidential information with discretion. ● Proficiency in computer software. Department Specific Functions & Qualifications The Sylvester Comprehensive Cancer Center & the Department of Molecular and Cellular Pharmacology are actively seeking a full-time Bioinformatics / Cheminformatics Analyst to work on the UHealth campus in Downtown Miami. At Sylvester, we are at the cutting edge of healthcare innovation, leveraging artificial intelligence and machine learning to transform drug discovery and development. Our mission is to accelerate the delivery of therapeutic solutions to patients through state-of-the-art technology and groundbreaking research. The Analyst will leverage expertise in computational chemistry, bioinformatics, and AI to process and analyze large-scale biomedical, small molecule bioactivity, structural biology, image, and clinicogenomic datasets, integrating them with the Sylvester Data Portal. The successful candidate will work within an interdisciplinary team of research scientists, data engineers, and full-stack developers, using state-of-the-art software development practices to enhance the university’s research activities. Primary Responsibilities: ● Process and analyze large-scale multi-omics and drug discovery datasets (WES, WGS, bulk/single-cell RNA-Seq, ATAC-Seq, Drug Screening, CRISPR Screening). ● Develop and maintain production-grade pipelines for processing and analysis of diverse biomedical datasets. ● Develop visualization and bioinformatic analysis tools for exploring diverse biomedical data. ● Integrate developed tools and pipelines with Sylvester’s internal end-user data analytics platform. ● Apply state-of-the-art AI, bioinformatics, and biostatistics approaches to cancer precision medicine. ● Write standard operating procedures and other relevant documentation. ● Develop and apply AI/ML models for structure-based and ligand-based drug design. ● Utilize computational tools to predict and optimize pharmacokinetic (PK) and pharmacodynamic (PD) properties of drug candidates. ● Design and implement algorithms to identify novel drug candidates and elucidate their mechanisms of action. ● Integrate and analyze large-scale biological, chemical, and clinical datasets to extract insights and inform drug discovery decisions. ● Collaborate with cross-functional teams to advance drug discovery projects. ● Analyze and interpret PK/PD data using advanced statistical and modeling software. ● Stay updated with advancements in computational chemistry, AI, and bioinformatics. ● Contribute to the development of new computational tools and methodologies. ● Present findings to both technical and non-technical stakeholders. ● Participate in scientific discussions and strategy meetings, providing AI/ML expertise. ● Author scientific papers, reports, and patents related to AI/ML in drug discovery. Preferred Requirements ● PhD or MSc degree in computational chemistry, computational biology, medicinal chemistry, pharmaceutical sciences, computational sciences, or a related field. ● Fluency in R or Python and Unix (bash). ● Experience with analyzing and interpreting different omics and/or drug discovery datasets (WES, WGS, bulk/single-cell RNA-Seq, ATAC-Seq, Drug Screening, CRISPR Screening). ● Experience with using common open-source bioinformatics/NGS workflows (BWA, STAR, Picard, GATK, etc.). ● Familiarity with machine learning frameworks (e.g., Scikit-learn, TensorFlow, PyTorch), and developing and deploying machine learning models. ● Highly motivated, strong work ethic, and able to work independently and with a team. ● Excellent skills in communication, organization, and time management. Preferred Qualifications ● For Ph.D. holders: 0-3 years of relevant experience in computational chemistry, AI, and drug discovery. ● Deep expertise with chemical toolkits such as DeepChem, ChemAxon, OEChem, or RDKit. ● Familiarity with drug discovery databases (CTRP, GDSC, PRISM, CCLE, DepMap, LINCS) and publicly available clinicogenomic datasets (CPTAC, TCGA, AACR Project GENIE, etc.). ● Experience with Cloud Computing Environments (e.g., Azure). ● Familiarity with relational (e.g., PostgreSQL) and/or NoSQL databases (e.g., MongoDB). ● Familiarity with container technologies (e.g., Docker). ● Experience with Generative AI tools and techniques. ● Familiarity with High Performance Computing. ● Familiarity with version control (Git). #LI-YC1 The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more. UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for. The University of Miami is an Equal Opportunity Employer - Females/Minorities/Protected Veterans/Individuals with Disabilities are encouraged to apply. Applicants and employees are protected from discrimination based on certain categories protected by Federal law. Click here for additional information. Job Status: Full time Employee Type: Staff Pay Grade: A9

Current Employees: If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review this tip sheet. The University of Miami/UHealth Department of SCCC has an exciting opportunity for a full time Sr. Bioinformatics Analyst to work in the UHealth Medical campus in Miami, FL. The Senior Bioinformatics Analyst works with research staff to extend capabilities in bioinformatics and improve understanding of genetic variation in human health and disease. The Senior Bioinformatics Analyst also assumes responsibility for the development and maintenance of novel bioinformatics methods. CORE JOB FUNCTIONS 1. Develops and maintains next generation data analysis pipelines. 2. Assists in analysis pipeline and algorithms development and validation. 3. Extracts features of interest from data relating to specific biological questions. 4. Contributes to the development and maintenance of genomic and clinical databases. 5. Performs statistical and integrative data analysis on genomics and clinical data. 6. Supervises team members and other data analysts. 7. Establishes standard operating procedures, documentation, and scripts to generate custom reports. 8. Progresses material for bioinformatics tutorials and training courses. 9. Tests the characterization and integration of diverse third-party bioinformatics algorithms. 10. Adheres to University and unit-level policies and procedures and safeguards University assets. Department Specific Functions: As a Sr. Bioinformatics Analyst, you will be responsible for the bioinformatics and data analytics needs of the PSR. • Be actively involved in mass-spectrometry based proteomics data generation, processing, quality assurance analytics and visualization. • Organize, maintain, and version control FASTA formatted databases for protein and peptide ID searches. • Manipulate RNA-seq data for searching against mass spectrometry-based protein and peptide mass and intensity data. • Perform searches to translation m/z and intensity data in the amino acid sequence information and assemble that data into protein-based results. • Perform statistical analysis on label free quantitation, SILAC, and mass barcode (TMT) results to generate volcano plots and results in other visualization space(s). This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. CORE QUALIFICATIONS Education: Bachelor’s Degree in relevant field. Master’s or PhD preferred in bioinformatics, applied mathematics, or large data analysis. Experience: Minimum 3 years of relevant experience Knowledge, Skills and Attitudes: • Skill in collecting, organizing, and analyzing data. • Ability to recognize, analyze, and solve a variety of problems. • Ability to exercise sound judgment in making critical decisions. • R-scripting and/or pearl scripting skills required. • Exceptional computer skills. • Excellent written and verbal communication skills. • Proficiency in MaxQuant, Sequest, Mascot, and Proteome Discoverer software tools. • Self-starter, diligent individual contributor, as well as delightful to work in a team environment. • Desire to apply proteomics towards improving quality of life and improving cancer diagnosis and care. • A strong publication record is desired but not required. #LI-YC1 The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more. UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for. The University of Miami is an Equal Opportunity Employer - Females/Minorities/Protected Veterans/Individuals with Disabilities are encouraged to apply. Applicants and employees are protected from discrimination based on certain categories protected by Federal law. Click here for additional information. Job Status: Full time Employee Type: Staff Pay Grade: A11

Bioinformatics Scientist The New York Stem Cell Foundation (NYSCF) is a rapidly growing and highly successful nonprofit whose mission is to accelerate cures through stem cell research. NYSCF is seeking a Bioinformatics Scientist to support the ongoing efforts of both The NYSCF Global Stem Cell Array™ as well as the wider research laboratory. This position reports to VP, Automation Systems and Stem Cell Biology, working closely alongside software engineers, research scientists and operations. The Bioinformatics Scientist will be responsible for the organization, storage and analysis of biological and biochemical data as it pertains to research performed at NYSCF. The position also requires learning essential experimental methods and laboratory science to support cutting-edge stem cell research and communicate with laboratory scientists about points of issue and excitement within their data. Responsibilities: • Design and develop computational tools and pipelines for various bioinformatics tasks including genomic alignment, assembly, variant detection, and expression analysis with data generated across a variety of platforms. • The organization, storage and development of tools to provide optimal access to both raw and processed data. • Development of novel algorithms / models for enabling predictions based on collected data. Minimum Qualifications • Proficiency in Python and/or R, SQL, and UNIX/Linux as well as Experience with Bioconductor or related tools. • Experience with pandas, numpy, and scipy for the efficient parsing, handling, and analysis of numerical and text-based data in Python. • Familiarity with matplotlib and associated libraries in Python, as well as ggplot2 and associated libraries in R, for generating complex graphics based on large data sets. • A solid foundation in hypothesis testing, statistical inference, and predicative modeling is required. • Experience with Amazon Web Services’ RDS, EC2, and S3 cloud computing and web services. • Willingness to learn advanced statistical and algorithmic techniques, such as relevant machine learning models and design of experiment (DoE). • MS in Bioinformatics preferred.

A world-renowned Healthcare System is seeking a Bioinformatics Engineer to perform next-generation sequencing data processing, analysis, and pipeline framework design in a dynamic and exciting academic environment at the nexus of cancer biology, computer science, statistics, and clinical research. The team develops data analysis pipelines and analytic platforms on both local high performance computing clusters and cloud-based resources to facilitate research activities and precision health initiatives. You will contribute toward the evolution of the current infrastructure design that leverage Nextflow and nf-core and a container-based systems approach that enable compute portability and reproducibility.

At Lilly, we unite caring with discovery to make life better for people around the world. We are a global healthcare leader headquartered in Indianapolis, Indiana. Our employees around the world work to discover and bring life-changing medicines to those who need them, improve the understanding and management of disease, and give back to our communities through philanthropy and volunteerism. We give our best effort to our work, and we put people first. We’re looking for people who are determined to make life better for people around the world. Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is $112,500 - $244,200 Overview: At Lilly, we serve an extraordinary purpose. We make a difference for people around the globe by discovering, developing and delivering medicines that help them live longer, healthier, more active lives. Not only do we deliver breakthrough medications, but you also can count on us to develop creative solutions to support communities through philanthropy and volunteerism. Position Summary: We are looking for a skilled Bioinformatics Cloud Engineer, DevOps to join our team of engineers to play a key role in managing our cloud infrastructure, cost optimization, and implement efficient solutions for bioinformatics workflows. The ideal candidate will have hands-on experience with AWS cloud ecosystems, cost optimization strategies, and proficiency in using Terraform, Ansible or other Infrastructure as Code platforms for infrastructure management. Knowledge of bioinformatics is also required. We're seeking team players with strong technical skills, and a positive, respectful attitude to enhance our innovative work environment. Responsibilities: Cloud Infrastructure Management • Design, deploy, and manage scalable and reliable AWS infrastructure to support bioinformatics workflows. • Utilize Terraform, Ansible, or other infrastructure as a service (IaaS) provisioning platforms for service management. Cost Optimization • Implement cost-effective solutions and optimize resource utilization within the AWS cloud environment. • Monitor and analyze cloud resource consumption, identifying opportunities for cost savings. • Interface with users and ensure best practices are being followed to save on costs. Bioinformatics Integration • Collaborate with bioinformatics team members to understand their computational requirements and integrate cloud solutions accordingly. • Work on optimizing and parallelizing bioinformatics workflows in the cloud environment. Security and Compliance • Implement and adhere to security best practices in cloud infrastructure. • Ensure compliance with data protection regulations and internal security policies by working closely with qualification vendors and validation teams. Collaboration • Work closely with cross-functional teams, including bioinformaticians, data scientists, and software developers, to understand their needs and provide technical support. Basic Requirements: • Bachelor’s or Master’s degree in Computer Science, Bioinformatics, or a related field. • Proven experience working with AWS cloud services, including but not limited to EC2, S3, Lambda, AWS Batch, Cost Explorer, Athena, Glue. • Hands-on experience with Terraform, Ansible, AWS Cloud Formation for infrastructure provisioning and management. • Strong understanding of cloud cost models and experience implementing cost optimization strategies. • Familiarity with bioinformatics tools and workflows. • Experience working in the biopharmaceutical or biotech industry. Additional Preferences: • AWS certifications (e.g., AWS Certified Solutions Architect, AWS Certified Data Analytics, AWS Certified DevOps Engineer) are a plus. • Experience with workflows (i.e. Nextflow) is a plus but not mandatory. • Experience working cross-departmentally with groups such as Validation, QA, and Information Security a strong plus. • Strong understanding of SQL and NoSQL databases required; big data, data lake management a plus. • Knowledge of data security and infrastructure best practices and compliance standards. • Excellent problem-solving skills and ability to troubleshoot complex issues. • Strong communication and collaboration skills. • We would prefer candidate to be located near our New York City, South San Francisco, San Diego, or Boston sites Lilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response. Lilly is an EEO/Affirmative Action Employer and does not discriminate on the basis of age, race, color, religion, gender, sexual orientation, gender identity, gender expression, national origin, protected veteran status, disability or any other legally protected status. Our employee resource groups (ERGs) offer strong support networks for their members and help our company develop talented individuals for future leadership roles. Our current groups include: Africa, Middle East, Central Asia Network, African American Network, Chinese Culture Network, Early Career Professionals, Japanese International Leadership Network (JILN), Lilly India Network, Organization of Latinos at Lilly, PRIDE (LGBTQ + Allies), Veterans Leadership Network, Women’s Network, Working and Living with Disabilities. Learn more about all of our groups. Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees. #WeAreLilly

VelocImmune (VI) Next is a technology development group at Regeneron that invents and develops state-of-the-art tools for biologic drug discovery. We are seeking a highly motivated Scientist with experience in computational biology to join our bioinformatics research team at the Tarrytown location. The Scientist will operate at the interface of multi-faceted data analyses and computational technology development to support therapeutic advancement in multiple disease fields. The Scientist will be part of a cross-functional and highly collaborative team towards the creation of next generation cell and gene therapies. A typical day in the life of a Scientist would include the following responsibilities: • Develop, apply and tailor computational methods for analyses of multi-omics datasets generated through cutting-edge sequencing technologies, including both single cell and bulk level, as well as shotgun and long read sequencing • Develop computational platforms and models (e.g. machine learning models) driven and trained by data • Work closely with web lab teams and clinicians for data processing, analysis, interpretation and visualization to support research in multiple stages of therapy development spanning discovery, pre-clinic and clinical studies • Self-motivated, passionate about computational data, and conduct research collaboratively in a team setting. This role may be for you if you have the following: • B.S./M.S. in one of the following fields: Computational Biology, Bioinformatics, Systems Biology, Computer Science, Mathematics, Engineering, or other related fields, with 6+ years of experience. • Proficiency in one of the commonly used programming languages, such as R, Python, Perl, Java, or Linux • Hands-on experience with analyses of high-throughput biological data; experience with single cell data or long read sequencing data analysis, or working experience with adaptive immune receptors will be a plus. • Passion for learning and exploring new fields Does this sound like you? Apply now to take your first step towards living the Regeneron Way! We have an inclusive and diverse culture that provides comprehensive benefits, which often include (depending on location) health and wellness programs, fitness centers, equity awards, annual bonuses, and paid time off for eligible employees at all levels! Regeneron is an equal opportunity employer and all qualified applicants will receive consideration for employment without regard to race, color, religion or belief (or lack thereof), sex, nationality, national or ethnic origin, civil status, age, citizenship status, membership of the Traveler community, sexual orientation, disability, genetic information, familial status, marital or registered civil partnership status, pregnancy or parental status, gender identity, gender reassignment, military or veteran status, or any other protected characteristic in accordance with applicable laws and regulations. The Company will also provide reasonable accommodation to the known disabilities or chronic illnesses of an otherwise qualified applicant for employment, unless the accommodation would impose undue hardship on the operation of the Company's business. For roles in which the hired candidate will be working in the U.S., the salary ranges provided are shown in accordance with U.S. law and apply to U.S.-based positions. For roles which will be based in Japan and/or Canada, the salary ranges are shown in accordance with the applicable local law and currency. If you are outside the U.S, Japan or Canada, please speak with your recruiter about salaries and benefits in your location. Please note that certain background checks will form part of the recruitment process. Background checks will be conducted in accordance with the law of the country where the position is based, including the type of background checks conducted. The purpose of carrying out such checks is for Regeneron to verify certain information regarding a candidate prior to the commencement of employment such as identity, right to work, educational qualifications etc. Salary Range (annually) $92,500.00 - $151,100.00