Bioinformatics Jobs

Surrozen is a biotechnology company focused on discovering and developing novel regenerative medicines with a focus on unlocking the powerful self-renewal properties of the body through specific control of the Wnt signaling pathway. Our vision is to engage the body's own biological tissue repair mechanisms with our targeted regenerative antibodies, overcoming research and development hurdles... that have been previously intractable, and have held back drug development efforts in the promising area of Wnt biology. Bioinformatics Research Associate Surrozen is recruiting a Research Associate to be involved in the design and analysis of experiments that apply high-throughput technologies such as single-cell and single-nuclear RNA-sequencing and spatially resolved transcriptomics to mechanism of action and biomarker discovery efforts. In this role you will also explore innovative approaches to combining data from multiple experimental modalities to inform discovery efforts and therapeutic development. This is an exciting opportunity to work with state-of-the-art techniques and analytical approaches on intriguing and challenging biological questions. The preferred candidate will bring enthusiasm, intellectual curiosity, critical thinking, scientific integrity, and a desire to understand biological principles of developing regenerative medicine therapeutics. Responsibilities • Analyze complex in-house scRNA-seq data with multiple experimental conditions in a range of tissues to contribute to mechanism of action and biomarker studies • Interrogate in-house and public bioinformatics data such as functional genomics ( e.g ., RNA-seq, scRNA-seq, spatially resolved transcriptomics, ATAC-seq, Chip-seq) and imaging data • Conduct rigorous, thorough analyses following best practices and using state-of-the-art approaches • Compose detailed analytical reports, concise and clear key summaries, and quality visualizations • Collaborate with scientists who work at the bench and interact closely with others doing bioinformatics analyses • Bachelor's or Master's in Bioinformatics, Biostatistics, Genomics, Computational Biology, or other relevant quantitative field required • Strong background in biology • At least one year of relevant experience (including graduate school) in biomedical data analysis • Demonstrated success analyzing bioinformatics data, especially RNA-seq and/or scRNA-seq is required • Experience working independently on analysis problems and also working collaboratively with biologists to understand critical questions and context • Fluent in relevant languages for data analysis (R required, Python) • Experience with Bioconductor packages and workflows We are an Equal Opportunity Employer offering a competitive salary and benefits

SENIOR BIOINFORMATICS SOFTWARE ENGINEER $150,000-$180,000... SAN FRANCISCO, CA THE COMPANY This series A biotech company is looking for a Bioinformatics Software Engineer to join their growing team in the Bay area. This team focuses on the automation of multi-omics data. THE ROLE In this role you can expect to: • Develop a data visualization platform that will enable scientists to interpret throughput seq data • Design and implement the scalable server and front-end components of the system, and design the data layer • Identify pain points in -omics data pipelines • Work with external biotech partners to generate biological insights YOUR SKILLS AND EXPERIENCE: • PhD in Computational Biology, Bioinformatics, Computer Science • Cloud computing software/infrastructure development experience • Proficient in Python or R • Knowledge of docker • Experience in data visualization THE BENEFITS: • $150,000-$180,000 • Competitive benefits • Equity • 401K HOW TO APPLY • Please register your interest by sending your CV to Ashley Biscailuz via the Apply link on this page

The Position Please note this position has the potential to support a remote work arrangement and may be based anywhere in the United States... At Roche, 94,000 people across 100 countries are pushing back the frontiers of healthcare. Working together, we’ve become one of the world’s leading research-focused healthcare groups. Our success is built on innovation, curiosity, and diversity. We believe every employee makes a difference. We are passionate about transforming patients’ lives. We are courageous in both decision and action, we believe that good business means a better world. This position is part of the Individualized Medicines Team in the Pharma Cell and Gene Therapy Group (PTC) responsible for the process development, manufacture and supply of personalized immunotherapies in collaboration with our global partners. We are seeking a highly motivated team member to contribute to the ongoing effort to evaluate and operationalize NGS and bioinformatics aspects of individualized medicine manufacturing. You will conduct bioinformatics analysis to support ongoing process development, refinement of the analysis pipelines and clinical manufacturing operations. The successful candidate is expected to effectively communicate and develop collaborative relationships with key stakeholders. Once a strategic framework for future manufacturing is in place, you will play a critical role in process development/implementation to enable commercial manufacturing of next generation therapeutics. Responsibilities • You will provide bioinformatics support to ongoing NGS process and assay development activities for individualized therapies. • You will collaborate with internal and external stakeholders to develop process understanding of existing pipelines and algorithms. • You will provide computational/bioinformatics support as needed across the broader PTC community. • You will build/optimize NGS bioinformatics pipelines to run in cloud infrastructure. • You will review and refactor bioinformatics code (in R and Python) according to best software practices. • You will be familiar with software engineering/QA aspects of production bioinformatics pipelines. • You will assist with testing and deploying a variety of bioinformatics pipelines into a production environment. • You will author technical and validation reports for bioinformatics and assay development activities. • You will provide strategic and operational support needed for bioinformatics functions within Genentech’s individualized medicines program and broader PTC. Qualifications The ideal candidate will meet the following qualifications: • Ph.D or MS in bioinformatics or a related discipline. 3+ years industry experience in bioinformatics analysis. • Expertise coding in Python and R, including version control (git, svn) • Previous experience using and developing bioinformatics pipelines for NGS data analyses (WES, WGS, RNAseq, scRNASeq, amplicon seq etc), including profiling accuracy of tools/algorithms. • Previous experience building pipelines/algorithms supporting NGS assay development. • Experience working with at least one workflow orchestration software (Nextflow, Cromwell, etc) • Experience authoring technical documentation, in collaboration with diverse stakeholders. • Must be detail-oriented with excellent collaborative and organizational skills in order to manage multiple projects and meet assigned deliverables. • Strong written and verbal communication skills and ability to effectively communicate with cross-functional teams. • Strategic agility and ability to adapt to the evolving personalized healthcare environment. • Comfortable working in a flexible, fast-paced team environment Additional nice to have qualifications/skills: • Prior experience in bioinformatics aspects of cancer immunology. • Experience with developing in cloud environments and using Docker or similar containerization packages. • Experience in deploying cloud (AWS) based compute infrastructure using services such as AWS Batch, Kubernetes etc. • Experience with deploying infrastructure as code (Terraform, Cloudformation). For Colorado-based applicants, the expected salary range for this position is $127,585 -157,605. Actual pay will be determined based on experience, qualifications, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits listed below. Benefits Roche offers highly competitive benefit plans and programs, including: • Medical, dental and vision insurance • 401(k) and 401(k) matching • Paid time off • Roche Long Term Incentive Plan (available at certain position levels) #ptcareers #cellandgenetherapycareers# Genentech is an equal opportunity employer, and we embrace the increasingly diverse world around us. Genentech prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity or expression, national origin or ancestry, age, disability, marital status and veteran status. Genentech requires all new hires to be fully vaccinated against COVID-19 as of their start date. This requirement is a condition of employment at Genentech, and it applies regardless of whether the position is located at a Genentech campus or is fully remote. If you are unable to receive the vaccine due to a disability or serious medical condition, or because it is prohibited as a result of your sincerely held religious beliefs, you will have an opportunity to request a reasonable accommodation

SOFTWARE ENGINEER, BIOINFORMATICS SAN FRANCISCO- IN OFFICE... $160,000 - $200,000 Do you want to make a lasting impact in the biotech world.. this is an exciting opportunity for a Software Engineer focused around Bioinformatics to join a high performing startup. If you are looking to be key contributor in a smaller data team and use your skills to identify pain point and implement new moths in the design of multi-omics pipelines, and work closely with biologists, this is a great job for you! THE COMPANY The company's mission is to foster a new revolution by creating a first-in-class platform that enables biologists to leverage the explosion of data that increases by orders of magnitude every year. They are looking for a strong Bioinformatician with a software engineering background to find the right tools to improve the platform as their stack evolves. THE ROLE This Software Bioinformatics Engineer will be a critical role in the growth of this startup. • Be apart of a collaborative team and fast-paced environment • Apply best software engineering practices related to computational and bioinformatics • Work with biotech companies to optimize their platform abilities • Develop statistical and visualization tools YOUR SKILLS & EXPERIENCE • Expertise around bioinformatics • Understand best software engineering practices • Knowledge around generating insights from biological datasets (microarrays or next generation sequencing) • Strong programming skills and proven commercial experience with Python • Commercial experience with cloud technologies (AWS / GCP) BENEFITS • 160,000- 200,000 base salary • Must be able to go into office Monday-Saturday • 401K • Medical, Dental, Vision Insurance HOW TO APPLY Please register your interest by sending your resume to Alexandra Oechsle via the apply link on this page

SENIOR BIOINFORMATICS SOFTWARE ENGINEER $150,000-$180,000... SAN FRANCISCO, CA THE COMPANY This series A biotech company is looking for a Bioinformatics Software Engineer to join their growing team in the Bay area. This team focuses on the automation of multi-omics data. THE ROLE In this role you can expect to: Develop a data visualization platform that will enable scientists to interpret throughput seq data Design and implement the scalable server and front-end components of the system, and design the data layer Identify pain points in -omics data pipelines Work with external biotech partners to generate biological insights YOUR SKILLS AND EXPERIENCE: PhD in Computational Biology, Bioinformatics, Computer Science Cloud computing software/infrastructure development experience Proficient in Python or R Knowledge of docker Experience in data visualization THE BENEFITS: $150,000-$180,000 Competitive benefits Equity 401K HOW TO APPLY Please register your interest by sending your CV to Ashley Biscailuz via the Apply link on this page

The Position Please note this position has the potential to support a remote work arrangement and may be based anywhere in the United States... At Roche, 94,000 people across 100 countries are pushing back the frontiers of healthcare. Working together, we’ve become one of the world’s leading research-focused healthcare groups. Our success is built on innovation, curiosity, and diversity. We believe every employee makes a difference. We are passionate about transforming patients’ lives. We are courageous in both decision and action, we believe that good business means a better world. This position is part of the Individualized Medicines Team in the Pharma Cell and Gene Therapy Group (PTC) responsible for the process development, manufacture and supply of personalized immunotherapies in collaboration with our global partners. We are seeking a highly motivated team member to contribute to the ongoing effort to evaluate and operationalize NGS and bioinformatics aspects of individualized medicine manufacturing. You will conduct bioinformatics analysis to support ongoing process development, refinement of the analysis pipelines and clinical manufacturing operations. The successful candidate is expected to effectively communicate and develop collaborative relationships with key stakeholders. Once a strategic framework for future manufacturing is in place, you will play a critical role in process development/implementation to enable commercial manufacturing of next generation therapeutics. Responsibilities • You will provide bioinformatics support to ongoing NGS process and assay development activities for individualized therapies. • You will collaborate with internal and external stakeholders to develop process understanding of existing pipelines and algorithms. • You will provide computational/bioinformatics support as needed across the broader PTC community. • You will build/optimize NGS bioinformatics pipelines to run in cloud infrastructure. • You will review and refactor bioinformatics code (in R and Python) according to best software practices. • You will be familiar with software engineering/QA aspects of production bioinformatics pipelines. • You will assist with testing and deploying a variety of bioinformatics pipelines into a production environment. • You will author technical and validation reports for bioinformatics and assay development activities. • You will provide strategic and operational support needed for bioinformatics functions within Genentech’s individualized medicines program and broader PTC. Qualifications The ideal candidate will meet the following qualifications: • Ph.D or MS in bioinformatics or a related discipline. 3+ years industry experience in bioinformatics analysis. • Expertise coding in Python and R, including version control (git, svn) • Previous experience using and developing bioinformatics pipelines for NGS data analyses (WES, WGS, RNAseq, scRNASeq, amplicon seq etc), including profiling accuracy of tools/algorithms. • Previous experience building pipelines/algorithms supporting NGS assay development. • Experience working with at least one workflow orchestration software (Nextflow, Cromwell, etc) • Experience authoring technical documentation, in collaboration with diverse stakeholders. • Must be detail-oriented with excellent collaborative and organizational skills in order to manage multiple projects and meet assigned deliverables. • Strong written and verbal communication skills and ability to effectively communicate with cross-functional teams. • Strategic agility and ability to adapt to the evolving personalized healthcare environment. • Comfortable working in a flexible, fast-paced team environment Additional nice to have qualifications/skills: • Prior experience in bioinformatics aspects of cancer immunology. • Experience with developing in cloud environments and using Docker or similar containerization packages. • Experience in deploying cloud (AWS) based compute infrastructure using services such as AWS Batch, Kubernetes etc. • Experience with deploying infrastructure as code (Terraform, Cloudformation). For Colorado-based applicants, the expected salary range for this position is $127,585 -157,605. Actual pay will be determined based on experience, qualifications, and other job-related factors permitted by law. A discretionary annual bonus may be available based on individual and Company performance. This position also qualifies for the benefits listed below. Benefits Roche offers highly competitive benefit plans and programs, including: •Medical, dental and vision insurance •401(k) and 401(k) matching •Paid time off •Roche Long Term Incentive Plan (available at certain position levels) #LI-AD1 #ptcareers #cellandgenetherapycareers# Genentech is an equal opportunity employer, and we embrace the increasingly diverse world around us. Genentech prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity or expression, national origin or ancestry, age, disability, marital status and veteran status. Genentech requires all new hires to be fully vaccinated against COVID-19 as of their start date. This requirement is a condition of employment at Genentech, and it applies regardless of whether the position is located at a Genentech campus or is fully remote. If you are unable to receive the vaccine due to a disability or serious medical condition, or because it is prohibited as a result of your sincerely held religious beliefs, you will have an opportunity to request a reasonable accommodation

BIOINFORMATICS ENGINEER $120,000-$135,000... SAN FRANCISCO, CA THE COMPANY This therapeutics company is looking for a Bioinformatics Infrastructure Engineer to join their growing team in the Bay area. As a Bioinformatics Infrastructure Engineer, you will help revolutionize how gene therapies are designed, developed, and manufactured. THE ROLE In this role you can expect to: • Contribute to the development of a cloud-native, data-driven computational research platform • Collaborate with computational and laboratory scientists to execute complex analyses and streamline bioinformatics workflows • Create computational pipelines and tools for analyzing and visualizing large-scale biological datasets YOUR SKILLS AND EXPERIENCE: • PhD in Computational Biology, Bioinformatics • Cloud computing software/infrastructure development experience • Prior NGS data analysis highly desirable • Proficient in Python or R • Knowledge of docker or terraform highly desirable THE BENEFITS: • $120,000-$135,000 + Bonus • Unlimited PTO • Equity • Daily Lunch HOW TO APPLY • Please register your interest by sending your CV to Ashley Biscailuz via the Apply link on this page

PT. Blocksphere Teknoniaga is now hiring Genomics Data Scientist in Jakarta. View job listing details and apply now. Job description for Genomics Data Scientist at Pt Blocksphere Teknoniaga Indonesia Job Desc: • Create tools, including developing, prototyping, and validating new features for genome analysis to enable better diagnostics andclinical management. • Develop tools and algorithm for quality control, processing and analysis of whole genome sequence data, e.g., alignment, variant callers for types of variants • Developing, prototyping, and validating new features for genome analysis • Continuously scan the scientific literature to identify new approaches to genome analysis that can be implemented to improve our capabilities Qualification: • Ideally a master or PhD in a strongly quantitative discipline such as (e.g. data science, computer science, or maths) with experience as data scientist working on bioinformatics, or equivalent experience, in one of the following... genetics/genomic with a strong computational component, statistical genetics, genetic epidemiology, bioinformatics with the focus on human genomics. • Experience with NGS data analysis from sequencing QC to annotation and variant calling. • Able to write in R, Python and Perl • Statistical background in multivariate analysis is a plus Jenis Pekerjaan: Penuh Waktu

Key Responsibilities: - Perform quality analysis of human array-based genotyping data - Conduct research and applied statistical genetics analyses - Present statistical data for sample characteristics and genotyping results, report and visualization to R&D Team and stake holder - Assist in development of analysis pipelines and internal database and findings - Collaborate with geneticists and technology team in the development of genomics application - Contribute to establish protocols and scientific publications Requirements: - Bachelor or Master of Science in Biotechnology, Biochemistry or in science-related fields - 1 year of relevant experience, generally as a bioinformatician and hands-on analysing microarray genotype data - Have qualified knowledge in the field of molecular biology, human genomics and data population - Proficiency with R and Phyton are plus points - Excellent interpersonal, oral, and written communication skills - Ability to work independently as... well as in teams - Strong background in bioinformatics and/or computational biology

Loker Agency sebagai Head of Bioinformatics. Apply a combination of theoretical and applied knowledge to lead a team of Bioinformaticians in exploratory projects for the development of omics bioinformatics pipeline Provide high quality analysis and expert advice and judgements to the team by applying extensive experience and deep knowledge of Bioinformatics concepts, methods, and tools. Initiate and implement new ideas or new changes to current bioinformatics pipelines, systems, or tools. Support the innovation, science and technology required to deliver the Biome Index strategy. Create, develop, and improve automated genomic data analysis pipelines and the supporting infrastructure to operate at a large scale. Investigate and utilize third-party software tools and writing novel software to solve problems and implement new product features. Creative solutions for common bioinformatics problems to ensure better software and service. Participate in collaborative projects with a... growing number of academic and commercial partners. Develop, maintain, and optimize workflows for NGS datasets. Collaborating with the CTO in the definition of the business strategy. Master or PhD in Bioinformatics or equivalent experience in a bioinformatics setting. Having more than 6 years of industrial and institutional research experience in WGS, GWAS, Omics data (metagenomics, metatranscriptomics), genome assembly construction, transcriptome/exome data analysis. Experience with Cloud computing (AWS, Google Cloud), Linux/UNIX, Python, PERL, R/Bioconductor packages and scripting. Specialties in microbiome, next generation sequencing, computational biology, computational genomics, statistical analysis, data visualization. Experience in comparative genomics, multi-omics analyses and data integration. Experience working with a variety of NGS data formats and NGS data manipulation tools. Comfortable with SQL databases and topics such as bulk data entry, query optimization, schema design and ORMs. Ability to contribute and provide guidance during all phases of the software development lifecycle. Deep understanding in scientific theory and its execution, with open minded personality. Self-motivated, results-driven, and problem-solver. Enthusiastic, hardworking, well-organized and able to prioritize. Able to work with others, and willing to contribute to team. Attention to detail and an inquisitive nature. Knowledge of variant calling and annotation tools. Application of statistical methods to data analysis. Broad knowledge of related bioinformatics resources and databases Experience of working in an agile development environment. Experience in human variation analysis or an area with specific application to variant interpretation. Versatile with software development and genomic data analysis. Good problem-solving ability while ensuring timely completion all project deadlines while developing efficient and faster techniques for data analysis