Bioinformatics Jobs

Informasi Loker Head of Bioinformatics - Nusantics. Apply a combination of theoretical and applied knowledge to lead a team of Bioinformaticians in exploratory projects for the development of omics bioinformatics pipeline Provide high quality analysis and expert advice and judgements to the team by applying extensive experience and deep knowledge of Bioinformatics concepts, methods, and tools. Initiate and implement new ideas or new changes to current bioinformatics pipelines, systems, or tools. Support the innovation, science and technology required to deliver the Biome Index strategy. Create, develop, and improve automated genomic data analysis pipelines and the supporting infrastructure to operate at a large scale. Investigate and utilize third-party software tools and writing novel software to solve problems and implement new product features. Creative solutions for common bioinformatics problems to ensure better software and service. Participate in collaborative projects... with a growing number of academic and commercial partners. Develop, maintain, and optimize workflows for NGS datasets. Collaborating with the CTO in the definition of the business strategy. Master or PhD in Bioinformatics or equivalent experience in a bioinformatics setting. Having more than 6 years of industrial and institutional research experience in WGS, GWAS, Omics data (metagenomics, metatranscriptomics), genome assembly construction, transcriptome/exome data analysis. Experience with Cloud computing (AWS, Google Cloud), Linux/UNIX, Python, PERL, R/Bioconductor packages and scripting. Specialties in microbiome, next generation sequencing, computational biology, computational genomics, statistical analysis, data visualization. Experience in comparative genomics, multi-omics analyses and data integration. Experience working with a variety of NGS data formats and NGS data manipulation tools. Comfortable with SQL databases and topics such as bulk data entry, query optimization, schema design and ORMs. Ability to contribute and provide guidance during all phases of the software development lifecycle. Deep understanding in scientific theory and its execution, with open minded personality. Self-motivated, results-driven, and problem-solver. Enthusiastic, hardworking, well-organized and able to prioritize. Able to work with others, and willing to contribute to team. Attention to detail and an inquisitive nature. Knowledge of variant calling and annotation tools. Application of statistical methods to data analysis. Broad knowledge of related bioinformatics resources and databases Experience of working in an agile development environment. Experience in human variation analysis or an area with specific application to variant interpretation. Versatile with software development and genomic data analysis. Good problem-solving ability while ensuring timely completion all project deadlines while developing efficient and faster techniques for data analysis. Hiring Insights Aktivitas lowongan Dipasang hari ini Lowongan Kerja Head of Bioinformatics - Nusantics. Gaji Head of Bioinformatics - Nusantics

We are looking for talented, agile and crazy BIOINFORMATICIAN willing to explore further in regards to their talents. Having idealism to work and develop Indonesia and passionate about genetic and science.

Apply a combination of theoretical and applied knowledge to lead a team of Bioinformaticians in exploratory projects for the development of omics bioinformatics pipeline Provide high quality analysis and expert advice and judgements to the team by applying extensive experience and deep knowledge of Bioinformatics concepts, methods, and tools. Initiate and implement new ideas or new changes to current bioinformatics pipelines, systems, or tools. Support the innovation, science and technology required to deliver the Biome Index strategy. Create, develop, and improve automated genomic data analysis pipelines and the supporting infrastructure to operate at a large scale. Investigate and utilize third-party software tools and writing novel software to solve problems and implement new product features. Creative solutions for common bioinformatics problems to ensure better software and service. Participate in collaborative projects with a growing number of academic and commercial... partners. Develop, maintain, and optimize workflows for NGS datasets. Collaborating with the CTO in the definition of the business strategy. Master or PhD in Bioinformatics or equivalent experience in a bioinformatics setting. Having more than 6 years of industrial and institutional research experience in WGS, GWAS, Omics data (metagenomics, metatranscriptomics), genome assembly construction, transcriptome/exome data analysis. Experience with Cloud computing (AWS, Google Cloud), Linux/UNIX, Python, PERL, R/Bioconductor packages and scripting. Specialties in microbiome, next generation sequencing, computational biology, computational genomics, statistical analysis, data visualization. Experience in comparative genomics, multi-omics analyses and data integration. Experience working with a variety of NGS data formats and NGS data manipulation tools. Comfortable with SQL databases and topics such as bulk data entry, query optimization, schema design and ORMs. Ability to contribute and provide guidance during all phases of the software development lifecycle. Deep understanding in scientific theory and its execution, with open minded personality. Self-motivated, results-driven, and problem-solver. Enthusiastic, hardworking, well-organized and able to prioritize. Able to work with others, and willing to contribute to team. Attention to detail and an inquisitive nature. Knowledge of variant calling and annotation tools. Application of statistical methods to data analysis. Broad knowledge of related bioinformatics resources and databases Experience of working in an agile development environment. Experience in human variation analysis or an area with specific application to variant interpretation. Versatile with software development and genomic data analysis. Good problem-solving ability while ensuring timely completion all project deadlines while developing efficient and faster techniques for data analysis. Hiring Insights Aktivitas lowongan Dipasang hari ini

BIOINFORMATICS ENGINEER $120,000-$135,000... SAN FRANCISCO, CA THE COMPANY This therapeutics company is looking for a Bioinformatics Infrastructure Engineer to join their growing team in the Bay area. As a Bioinformatics Infrastructure Engineer, you will help revolutionize how gene therapies are designed, developed, and manufactured. THE ROLE In this role you can expect to: • Contribute to the development of a cloud-native, data-driven computational research platform • Collaborate with computational and laboratory scientists to execute complex analyses and streamline bioinformatics workflows • Create computational pipelines and tools for analyzing and visualizing large-scale biological datasets YOUR SKILLS AND EXPERIENCE: • PhD in Computational Biology, Bioinformatics • Cloud computing software/infrastructure development experience • Prior NGS data analysis highly desirable • Proficient in Python or R • Knowledge of docker or terraform highly desirable THE BENEFITS: • $120,000-$135,000 + Bonus • Unlimited PTO • Equity • Daily Lunch HOW TO APPLY • Please register your interest by sending your CV to Ashley Biscailuz via the Apply link on this page

Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people. Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry, by making genetic testing affordable and accessible for everyone to guide health decisions across all stages of life.The oncology... bioinformatics pipeline development team works on a variety of projects ranging from innovations in healthcare systems to taming the chaos of biology. We are constantly improving our tools and technologies to deliver the highest quality actionable information to doctors and patients. Behind every sample that comes in through the door we know there is an individual and a family looking for answers. What you’ll do: • Maintaining, improving, and adding to our catalog of production bioinformatics pipelines across an expanding set of modern assays • Scaling our pipelines • Collaborate closely with bioinformaticians, molecular biologists, and software engineers What you bring: • Bachelor's degree required in bioinformatics, statistics, computer science or related discipline; advanced degree preferred • 5+ years of experience working in a bioinformatics or similar role • Strong experience in bioinformatics and pipeline efforts • Passion about writing clean, reusable, and composable bioinformatics pipelines • Capability to lead technical efforts • Strong experience analyzing data from a range of genetics technologies (especially Illumina and PacBio sequencing and arrays) • Passion to contribute to source code for large open source projects with Python knowledge required • Excellent communication (written and verbal) and data presentation skills • Preferred: Experience with Distributed Workflow managers, Docker, and cloud computing environments At Invitae, we value diversity and provide equal employment opportunities (EEO) to all employees and applicants without regard to race, color, religion, national origin, gender, sexual orientation, age, marital status, veteran status, or disability status. We will consider for employment qualified applicants with criminal histories in a manner consistent with the requirements of the San Francisco Fair Chance Ordinance. #LI-Remote

Since 2013, AbbVie has expanded its commitment to the San Francisco Bay Area with the consolidation of three Bay Area facilities to a new Bay Area headquarters in South San Francisco. AbbVie employees in the Bay Area drive AbbVie’s research-based, innovation driven missions in healthcare. Specifically, Bay Area employees bring deep scientific expertise and commercial excellence to advance cancer... care. Current oncology areas of focus include immuno-oncology, tumor targeting, tumor dependency and precision medicine. With facilities positioned in the heart of the biotechnology industry, we are able to collaborate with the best and brightest minds in oncology. • General Position Summary/Purpose: • Contribute to multiple stages of development of targeted molecules by supporting the implementation of scientifically driven development plans, primarily on setting up the strategy and executing on bioinformatics analysis of biomarkers of interest for various projects. • Develop, maintain, and refine bioinformatics workflows and analytical tools for clinical biomarker data analyses. Current focus of this position is primarily on leading bioinformatics for clinical development. • Practical knowledge of bioinformatics tools and resources, experience with next generation sequencing (NGS) data, various high-throughput omics analysis pipeline development, integrative omics data and cloud computing, and background in genomics and molecular biology. • Practical knowledge and leadership experiences in designing, strategic planning and execution of patient stratification strategy and companion diagnostics development, especially in terms of biomarker data package submission to regulatory agencies. • As a member of our bioinformatics group working with other research scientists and clinicians in a highly collaborative and dynamic environment to support biomarker investigations and translational medicine. Key Accountabilities/Core Job Responsibilities: • Providing appropriate experimental design and biospecimen sampling scheme, molecular data analysis strategy and statistical support to identify mechanisms of action or resistance for therapeutics, identification of novel targets and candidate biomarkers for various programs and projects and other research and clinical objectives. • Working with standard bioinformatics tools, visualization packages, and omics databases/annotations resources. • Developing and using bioinformatics pipelines to prepare and analyze data, working closely with data engineers and methodology development group in pipeline developments. • Analyzing and working with NGS data, ideally exome sequence data and other omics data etc. • Interpreting and translating data to biological knowledge. • Participating in cross-company multidisciplinary teams for discovery, preclinical, and clinical development, biomarker and translational research. • Presenting in internal and cross-company group meetings and external scientific meetings. Qualifications/Experience: • Expertise and experiences in experimental designs and biomarker driven clinical trial designs. • 12+ years of experiences in Bioinformatics and Computational Biology supporting clinical projects or drug development, preferably in Biotech and/or Pharma industry. • Demonstrated fluency in UNIX/Linux computing environment. • Proficiency in R programming, other programming skills such as in C/C++ and a scripting language such as Perl or Python would be desirable. • Familiarity with SAS, JMP or JMP Genomics, OmicSoft ArraySuite are a plus. • Excellent working knowledge of current best practices in genetic variant discovery and validation methods. • Strong organizational, written, and communication skills. • Excellent analytical and problem solving abilities. • A proven track record in scientific publications and invited presentations at major conferences on biomarker correlative studies in clinical trials. • Knowledge of cellular and molecular biology, oncology, and drug development processes. • Enjoys working in a fast paced and highly collaborative dynamic environment with a diverse team to tackle complex problems. • Eager to learn and think outside the box. • Is disciplined and driven to deliver ongoing research results. • Has a positive attitude with a willingness to roll up their sleeves and do what it takes to get the job done. • Is highly organized and detail oriented. • Is a strong written and verbal communicator. • Has a hard work ethic with emphasis on execution. Education Requirements (degree, certifications, etc.): Include must have and preferred PhD in Bioinformatics, Computational Biology, Statistical Genetics/Genomics, Computer Science, Statistics/Biostatistics with strong molecular biology background, and industry experience preferred. Preferred Skills/Abilities • Experiences in developing therapeutics for oncology or immunology or immune-oncology • Strong understanding and proven track record in genomics/genetics technology and applications to clinical development

The Position The Microchemistry, Proteomics, Lipidomics (MPL) and Next Generation Sequencing (NGS) Department is seeking an experienced Scientist/Senior Scientist with a record of high impact research involving the development and application of novel bioinformatic or machine learning algorithms for proteomics to join the group. The new hire will have the opportunity to develop an independent... research program and work collaboratively to develop groundbreaking tools and algorithms essential to the high-throughput analysis of cutting-edge proteomics techniques, including single cell proteomics, and apply them to biological questions essential to Genentech’s drug discovery efforts. Advances in mass spectrometry proteomics and associated areas have revolutionized the study of cellular proteins and motivated in depth molecular characterization of normal human physiology and disease biology. The MPL group is a world leader in the application of technologies, including mass spectrometry and plate-based proteomic methods, to elucidate new models of the molecular mechanisms of disease and the development of novel therapeutics. The successful candidate will lead efforts to create the algorithms essential to transform data generated by new proteomic technologies into actionable biological results. As is true across Genentech, research in MPL is fast paced and highly collaborative, drawing on the expertise of some of the world's leading experts in biochemistry, technology, computational biology and disease. Who You Are • We are looking for a computational leader with rich, demonstrated experience at the intersection of algorithm development and complex biological problems. • This position requires a PhD in the computer sciences, Bioinformatics, or a scientific field of study such as Biology, Chemistry, or Biochemistry. • A high priority will be placed on demonstrated experience in the application of machine learning approaches, including deep learning, to biological data. • Experience with data generated from analytical instrumentation such as mass spectrometers and/or prior proteomics experience is highly desired. • A working knowledge of both Python and R, with a mastery of either or both languages, is required. • Familiarity with modern software engineering best practices is a must, as is the ability to make project decisions independently. • Strong communication & interpersonal skills are essential for success in this collaborative role. Relocation benefits are available for this job posting. #LI-GL2 #MPL Genentech is an equal opportunity employer, and we embrace the increasingly diverse world around us. Genentech prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity or expression, national origin or ancestry, age, disability, marital status and veteran status. Genentech requires all new hires to be fully vaccinated against COVID-19 as of their start date. This requirement is a condition of employment at Genentech, and it applies regardless of whether the position is located at a Genentech campus or is fully remote. If you are unable to receive the vaccine due to a disability or serious medical condition, or because it is prohibited as a result of your sincerely held religious beliefs, you will have an opportunity to request a reasonable accommodation

STAFF BIOINFORMATICS SCIENTIST SAN FRANCISCO BAY AREA... $150,000-$180,000 + EQUITY + BENEFITS Ready to join the latest in synthetic biology/sustainability? This exciting start-up is looking to develop its internal bioinformatics tools and capabilities in a big way. If you are passionate about producing products that meet demand in a more sustainable way, apply here! THE ROLE As the Staff Bioinformatics Scientist, your responsibilities will include: • Leading pipeline development efforts for this team’s new bioinformatics system • Analyzing NGS datasets to drive internal decision-making • Developing internal-facing web applications for scientist usage YOUR SKILLS AND EXPERIENCES: The successful Staff Bioinformatics Scientist will have the following skills and experience: • PhD in a quantitative field • Extensive experience developing (not just using) pipelines from scratch • Proficiency in Python • Previous usage of a wide range of bioinformatics tools (Samtools, VCF, BLAST, etc.) • Exposure developing internal-facing web applications highly desirable • Synthetic biology background highly desirable • Sequencing data analysis skills highly desirable THE BENEFITS: • Generous Salary: $150,000-$180,000 Base Salary • Equity in a fast-growing start-up • Comprehensive benefits package • Unlimited PTO policy • 401k • Home internet/phone monthly stipend • And much more! HOW TO APPLY: Please register your interest by sending your CV to Riley Hsia via the Apply link on this page

The Position At Roche, 94,000 people across 100 countries are pushing back the frontiers of healthcare. Working together, we’ve become one of the world’s leading research-focused healthcare groups. Our success is built on innovation, curiosity, and diversity. We believe every employee makes a difference. We are passionate about transforming patients’ lives. We are courageous in both decision and... action, we believe that good business means a better world. This position is part of the Individualized Medicines Team in the Pharma Cell and Gene Therapy Group (PTC) responsible for the process development, manufacture and supply of personalized immunotherapies in collaboration with our global partners. We are seeking a highly motivated team member to contribute to the ongoing effort to evaluate and operationalize NGS and bioinformatics aspects of individualized medicine manufacturing. You will conduct bioinformatics analysis to support ongoing process development, refinement of the analysis pipelines and clinical manufacturing operations. The successful candidate is expected to effectively communicate and develop collaborative relationships with key stakeholders. Once a strategic framework for future manufacturing is in place, you will play a critical role in process development/implementation to enable commercial manufacturing of next generation therapeutics. Responsibilities • You will provide bioinformatics support to ongoing NGS process and assay development activities for individualized therapies. • You will collaborate with internal and external stakeholders to develop process understanding of existing pipelines and algorithms. • You will provide computational/bioinformatics support as needed across the broader PTC community. • You will build/optimize NGS bioinformatics pipelines to run in cloud infrastructure. • You will review and refactor bioinformatics code (in R and Python) according to best software practices. • You will be familiar with software engineering/QA aspects of production bioinformatics pipelines. • You will assist with testing and deploying a variety of bioinformatics pipelines into a production environment. • You will author technical and validation reports for bioinformatics and assay development activities. • You will provide strategic and operational support needed for bioinformatics functions within Genentech’s individualized medicines program and broader PTC. Qualifications The ideal candidate will meet the following qualifications: • Ph.D or MS in bioinformatics or a related discipline. 3+ years industry experience in bioinformatics analysis. • Expertise coding in Python and R, including version control (git, svn) • Previous experience using and developing bioinformatics pipelines for NGS data analyses (WES, WGS, RNAseq, scRNASeq, amplicon seq etc), including profiling accuracy of tools/algorithms. • Previous experience building pipelines/algorithms supporting NGS assay development. • Experience working with at least one workflow orchestration software (Nextflow, Cromwell, etc) • Experience authoring technical documentation, in collaboration with diverse stakeholders. • Must be detail-oriented with excellent collaborative and organizational skills in order to manage multiple projects and meet assigned deliverables. • Strong written and verbal communication skills and ability to effectively communicate with cross-functional teams. • Strategic agility and ability to adapt to the evolving personalized healthcare environment. • Comfortable working in a flexible, fast-paced team environment Additional nice to have qualifications/skills: • Prior experience in bioinformatics aspects of cancer immunology. • Experience with developing in cloud environments and using Docker or similar containerization packages. • Experience in deploying cloud (AWS) based compute infrastructure using services such as AWS Batch, Kubernetes etc. • Experience with deploying infrastructure as code (Terraform, Cloudformation). #LI-AD1 #ptcareers #cellandgenetherapycareers# Who we are A member of the Roche Group, Genentech has been at the forefront of the biotechnology industry for more than 40 years, using human genetic information to develop novel medicines for serious and life-threatening diseases. Genentech has multiple therapies on the market for cancer & other serious illnesses. Please take this opportunity to learn about Genentech where we believe that our employees are our most important asset & are dedicated to remaining a great place to work. Unless entitled to a reasonable accommodation under applicable law, employees are required to be fully vaccinated against COVID-19 in accordance with customer requirements, the company’s health and safety obligations and/or applicable law or guidelines. Diversity and Inclusion (D&I) are critical to the success of our company and our impact on society. We believe that by championing diversity of background, thought and experience, we can foster a sense of belonging and provide an environment where every employee feels valued, included, and able to contribute their best for the patients we serve. We’re focused on attracting, retaining, developing and advancing our people to their full potential by rewarding bold ways of thinking and integrating inclusive behaviors into every aspect of our work. Genentech is an equal opportunity employer, and we embrace the increasingly diverse world around us. Genentech prohibits unlawful discrimination based on race, color, religion, gender, sexual orientation, gender identity or expression, national origin or ancestry, age, disability, marital status and veteran status. For more information about equal employment opportunity, visit our Genentech Careers Homepage

Job Description Look for more than answers... At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect change at a rate unheard of in many organizations of our size and scope. While we invest in and develop technology to drive our innovations, our ongoing success relies on our people. As a Senior Bioinformatics Research Scientist – Computational Biology/Data Science, remote, you will work for the world leader in the industry, with a career where you will have the opportunity to collaborate and affect change while expanding your leadership skills and technical knowledge. The Senior Bioinformatics Research Scientist will work 100% remote and can be located anywhere in the US. Senior Bioinformatics Research Scientist – Computational Biology/Data Science, remote, the role: The Senior Bioinformatics Research Scientist will work as a Computational Biologist/Data Scientist focusing on clinical methods development for NGS data, including analytical workflows, comparative analyses, and development of QC methods and results. Successful candidate will design and conduct data analyses and research on next-generation sequencing (NGS) data as a core team member collaborating with R&D bench scientists and software engineers during the clinical product development process, using cloud compute resources. Duties include providing technical/scientific leadership in design and development of new approaches to complex problems to meet project or organizational initiatives, mentoring other scientists and project team members to accomplish project objectives, and preparing reports, scientific publications, and/or conference presentations of results. To qualify, the ideal candidate will have the following skills and experience: • PhD with 1+ year experience, or MS with 3+ years experience, or BS with 5+ years experience in an industrial or academic setting working with clinical and biological data and underlying technologies including bioinformatics methods, database development, query/scripting/programming languages, cloud development, agile methodology, DevOps and other data analysis tools. • At least 3 years of experience working in a regulated industrial life sciences environment. • Significant relevant publication or patent record, and/or at least 2 years of relevant research and/or development experience Apply Today Join us for competitive benefits and development opportunities in a progressive and supportive environment. Help us improve our service, and the experiences of our patients and colleagues. Work with us and together we can be better. Your Quest career. Seek it out. All requirements are subject to possible modifications to reasonably accommodate individuals with disabilities. Quest Diagnostics is an Equal Opportunity Employer: Women / Minorities / Veterans / Disabled / Sexual Orientation / Gender Identity or Citizenship