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More Bioinformatics Jobs

Sr. Research Associate 3, Bioinformatics

United States
2022/05/28.

Division: Biostatistics and Bioinformatics Shared Resource The University of Miami is among the top research universities and academic medical centers in the nation, and one of the largest private employers in South Florida. With more than 16,000 faculty and staff, the University strives for excellence, and is driven by a powerful mission to transform and impact the lives of its students... patients, members of the community, and people across the globe. The University is committed to fostering a culture of belonging, where everyone feels valued and has the opportunity to add value. Through values of Diversity, Integrity, Responsibility, Excellence, Compassion, Creativity, and Teamwork (DIRECCT) the U community works together to create an environment driven by purpose, excellence, community, and service. Are you interested in being a key member of a bioinformatics team in a shared resource at a major cancer center? A Senior Research Associate 3 position is available immediately in the Biostatistics and Bioinformatics Shared Resources, Sylvester Comprehensive Cancer Center at the University of Miami. The successful candidate will provide up to date bioinformatics and molecular informatics data analysis and expertise for clinical, laboratory and epidemiological studies. This analysis includes but is not limited to: gene expression analysis for bulk/single-cell transcriptome profiling and/or gene regulatory network building, metagenomics, microRNA target analysis, variant calling, genome or transcriptome assembly from next generation sequencing data, and its visualization, SNP functionality analysis. This position will collaborate with Cancer Center investigators on experimental design and subsequent high dimensional data analysis of gene expression, genomics and/or proteomics studies. RESPONSIBILITIES: 1. Support the Division of Biostatistics of the Shared Resources Core on bioinformatics data analysis for cancer-related research. This includes implementing best-practice bioinformatics pipelines, developing database for genomic studies, preprocessing and analyzing high-throughput data generated from laboratory, publicly available cancer genomic data to support studies initiated by investigators in the Cancer Center. 2. Collaborates with Cancer Center members in planning and analyzing data from laboratory-based and epidemiologic investigations. 3. Collaborates with Cancer Center members in developing cancer-related grant proposals. Carries out corresponding data analysis. 4. Interacts with internal contacts such as principal investigator, research project team, clinicians and data processing and management staff to provide the statistical and bioinformatics input required in the design, conduct and analysis of scientific research studies. 5. Collaborates with Cancer Center members on writing manuscripts or publication, and in preparing abstracts and poster for scientific presentation. 6. Evaluates and implements of existing and emerging bioinformatics tools and applications; tracking project effort and milestones; and troubleshooting. 7. Participate in educational activities of the division and cancer center by preparing and presentations on bioinformatics methods and its application 8. Ensures all research is undertaken according to good research practice. 9. Adheres to University and unit-level policies and procedures and safeguards University assets. This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. Qualifications: Master’s degree in bioinformatics, computational science, statistics, or a related area. Strong programming skills in statistical and computational languages software such as R and python. Effective communication skills are required. Minimum 3 years of relevant experience. Must enjoy working with others, have initiative, and be reliable. Attention to detail and multitasking abilities are critical, with the ability to work both independently and as part of a team. Prefer strong critical thinking and problem-solving skills. Strong ability in collecting, organizing, analyzing, and reporting data. For more information or to apply for this position, please go to: Full Job Posting: https://umiami.wd1.myworkdayjobs.com/en-US/UMCareerStaff/details/Assoc-Scientist–SOM_R100046507-1?q=R100046507 Job Posting Contact: Yuguang Ban, yuguang.ban@med.miami.edu Tagged as: Life Sciences

Bioinformatics scientist

Miami, FL
2022/05/28.

JOB OVERVIEW : The job’s main responsibility is to collaborate with biologists, bioinformaticians, and clinicians to design, validate, and maintain bioinformatics pipelines and applications... Duties and Responsibilities : • Provide bioinformatics support to R&D by analyzing and interpreting NGS data • Validate new assays and clinical product development • Perform NGS data analysis and QA / QC platform • Provide trouble shooting and improvement for bioinformatics pipeline and applications for clinical tests • Develop new methods and maintain bioinformatics pipelines JOB SPECIFICATIONS Education and Knowledge : • PhD degree in bioinformatics, computational biology, structural biology, biophysics, biology and computer science, or related discipline preferred. • MS degree in bioinformatics, computational biology, structural biology, biophysics, biology and computer science, or related discipline plus at least 5 years industrial experience • Familiar with molecular biology, biological pathways, and genomics Technical Competencies (Skill, Abilities and Capabilities) : • Proficiency in the use of bioinformatics software, packages, and database • Proficiency with Perl, Python, R, bash, C / C++, java, and SQL in Linux / Unix environment • Proficiency in utilizing and development biomolecular modeling and dynamics tools • Strong skills in the application of statistical analytical methods in genetic data analysis • Excellent oral and written communication skills • Ability to work within a team, among cross-departments, and as an independent contributor, requiring minimal supervision Experience : • At least 3 years research and development experiments in the related fields • Experience in using high performance computing and storage systems • Must have industry experience outside of academia. • Experience in Illumina sequencing data and bioinformatics Next Generation Sequencing pipelines Last updated : 2022-04-20

Bioinformatics - Associate Scientist III-------Remote

Miami, FL
2022/05/28.

Job Description Would prefer onsite in Cambridge, but can be remote... • Project involves developing multi-omics directed graph networks based on causal inference framework based on multiple data types (e.g., clinical, RNA-seq, epigenetic, proteomic, and/or genetic data). • Must be expert in at least one area of causal inference such as interpretable machine learning or data fusion problem, e.g., to reduce space of plausible causal relationships and how data from multiple sources can be combined to make causal inferences. • Experience with machine learning in the context of causal inference, so that the predictive models are more than just a black box, is strongly desired. • Ideal candidate is experienced in both genomic data, causal inference, and machine learning, but the latter two are the most important. Skills / Qualifications Required • PhD Student / Master's degree In Statistics, Physics, Computer Science or related area with 2-3 years' experience • Causal Inference • Bayesian DAGs • Machine Learning • Data preprocessing for multiple data types • Genomics experience • Programing skills (python javascript c++), experience analyzing real word data and experience utilizing deep neural network

Senior Bioinformatics Engineer Remote

Miami, FL
2022/05/28.

100% Remote Senior NGS Bioinformatics Scientist needed for Series C - $130M Biotechnology company This Jobot Job is hosted by Patrick Murray... Are you a fit? Easy Apply now by clicking the "Apply" button and sending us your resume. Salary $120,000 - $170,000 per year A Bit About Us Founded in 2015, we are a Series C Biotechnology company that has raised over $125M in funding and are becoming a world leader in precision oncology dedicated to transforming cancer care. Our team of scientists, engineers and problem-solvers are dedicated to helping healthcare providers to provide actionable insight to the lives of cancer patients. We are currently looking to add a new Computational Biologist / Bioinformatician to our growing engineering team. This person will be major contributor moving forward. If you feel this position could be a fit, do not hesitate to apply today. Why join us? You will be part of a fast-growing company with a world class, disruptive Oncology product helping saves around the world. You will be joining a team of smart, fun, driven people, in a position with a lot of opportunity to learn and grow. • Competitive Base Salary - $120,000-$160,000 • Work From Home • Comprehensive Benefits Package • Flexible Work Schedules • Accelerated Career Growth • Excellent PTO • Full-Time Position, Stable/Growing Company • Modern Environment • State of the Art Technology Job Details Requirements • B.S. degree in Computer Science, Mathematics, Bioinformatics, Computational Biology, Cancer Biology, or related field • At least 5 years of professional bioinformatics software/pipeline development experience • Expertise in at least one scripting language (preferably Python) • Experience with NGS bioinformatics workflow including read QC, reference mapping, mutation detection, annotation and downstream filtering • Experience with version control software such as Git/GitHub or similar • Knowledge of UNIX systems Preferred But Not Mandatory • Hands-on experience with AWS • Experience with Docker or other containerization technologies • Experience with relational databases • Strong statistical and/or machine learning background • Familiarity with lab information management systems (LIMS) or similar • Experience with software validation in a regulated clinical environment (CAP/CLIA/FDA/NY State) is a plus • Familiarity with modern software development and deployment practices included Automated testing, CI/CD, etc. Interested in hearing more? Easy Apply now by clicking the "Apply" button

Associate Scientist, Bioinformatics

Miami, FL
2022/05/28.

Division: Biostatistics and Bioinformatics Shared Resource The University of Miami is among the top research universities and academic medical centers in the nation, and one of the largest private employers in South Florida. With more than 16,000 faculty and staff, the University strives for excellence, and is driven by a powerful mission to transform and impact the lives of its students... patients, members of the community, and people across the globe. The University is committed to fostering a culture of belonging, where everyone feels valued and has the opportunity to add value. Through values of Diversity, Integrity, Responsibility, Excellence, Compassion, Creativity, and Teamwork (DIRECCT) the U community works together to create an environment driven by purpose, excellence, community, and service. Are you interested in being a key member of a bioinformatics team in a shared resource at a major cancer center? This Associate Scientist position will support a wide array of bioinformatics research services in the Sylvester Comprehensive Cancer Center (SCCC) Biostatistics and Bioinformatics Shared Resource (BBSR) at the University of Miami. The Associate Scientist (Bioinformatician) will provide up to date bioinformatics and molecular informatics data analysis and expertise for clinical, laboratory and epidemiological studies. This analysis includes but is not limited to: gene expression analysis for transcriptome profiling and/or gene regulatory network building, microRNA target analysis, variant calling, epigenetics data preprocessing and analysis, SNP functionality and pathway analysis, and its visualization. This position will collaborate with Cancer Center investigators on experimental design and subsequent high dimensional data analysis of gene expression, genomics and/or proteomics studies. Duties and Responsibilities: • Individual will be responsible for initiating and maintaining independent research collaborations with SCCC clinicians and basic scientists, and for working collaboratively with members of the division on research or development projects. • Collaborates with Cancer Center members in planning and analyzing data from laboratory-based and epidemiologic investigations. • Collaborates with Cancer Center members in developing cancer-related grant proposals. Carries out and/or supervises corresponding data analysis. • Interacts with internal contacts such as principal investigator, research project team, clinicians and data processing and management staff to provide the statistical input required in the design, conduct and analysis of scientific research studies. • Collaborates with Cancer Center members on writing manuscripts or publication, and in preparing abstracts and poster for scientific presentation. • Stays current with new bioinformatics methodology applicable to cancer studies, and incorporates major useful advances into proactive. • Supports the BBC Biostatistics Division and other members of the core on bioinformatics aspects of Cancer Center research-related to clinical trials, epidemiologic studies, and laboratory-based investigation. • Other duties as assigned. Qualifications: A Ph.D. degree or equivalent experience, with a minimum of 5 years of post-doctoral experience with bioinformatics and molecular informatics data analysis in support of basic, translational, clinical, and/or epidemiological studies. Must enjoy working with others, have initiative, and be reliable. Attention to detail and multitasking abilities are critical, with the ability to work both independently and as part of a team. Proficiency in R/Python programming and excellent English communication skills (both verbal and written) are required. Prefer experience with statistical and computational methodology development with application in genomics studies, with single-cell RNA/DNA sequencing and metagenomics data analysis, with integrative multi-omics data analysis, and spatial genomics data analysis. Prefer strong critical thinking and problem solving skills with proven ability to apply creative approaches to complicated questions. Application Instructions: For more information or to apply for this position, please go to: Full Job Posting: https://umiami.wd1.myworkdayjobs.com/en-US/UMCareerStaff/job/Miami-FL/Associate-Scientist-Bioinformatician-_R100054919-1 Job Posting Contact: Yuguang Ban, yuguang.ban@med.miami.edu

Bioinformatics

Miami, FL
2022/05/28.

Job Description Would prefer onsite in Cambridge, but can be remote... • Project involves developing multi-omics directed graph networks based on causal inference framework based on multiple data types (e.g., clinical, RNA-seq, epigenetic, proteomic, and/or genetic data). • Must be expert in at least one area of causal inference such as interpretable machine learning or data fusion problem, e.g., to reduce space of plausible causal relationships and how data from multiple sources can be combined to make causal inferences. • Experience with machine learning in the context of causal inference, so that the predictive models are more than just a black box, is strongly desired. • Ideal candidate is experienced in both genomic data, causal inference, and machine learning, but the latter two are the most important. Skills / Qualifications Required • PhD Student / Master's degree In Statistics, Physics, Computer Science or related area with 2-3 years' experience • Causal Inference • Bayesian DAGs • Machine Learning • Data preprocessing for multiple data types • Genomics experience • Programing skills (python javascript c+), experience analyzing real word data and experience utilizing deep neural network

Senior Bioinformatics Scientist (Remote)

Miami, FL
2022/05/28.

Basepair develops SaaS to manage, analyze and interpret next generation sequencing (NGS) data. Scientists and physicians working in molecular diagnostics, biopharma, assay development at top universities like Harvard, Stanford, NYU, UCSD, etc. use Basepair to make breakthrough medical discoveries and provide better medical care to patients. Founded by a scientist from Harvard Medical School... Basepair is driven by the mission to use technology to improve healthcare. Our team is analytical, fast-paced and informal. We are funded by venture capital and NIH, and we are growing rapidly. We are looking for a technically skilled and detail-oriented scientist to join our bioinformatics team remotely. Your goal is to develop, validate and update best-in-class NGS pipelines. You will communicate with existing and prospective users to answer questions about our software, perform custom analyses, and help guide strategic scientific direction for Basepair. You will be the face of Basepairs bioinformatics expertise, conducting webinars, publishing content, etc. Requirements • Develop, validate and update best-practices pipelines for variant calling, gene expression, epigenetics, single cell RNA-Seq, etc. • Have knowledge of public datasets and consortiums • Perform custom bioinformatics analysis for users • Conduct webinar, QnA, etc. to introduce NGS pipelines to bench scientists • Write white papers and blogs • Represent Basepair at conferences and meetings What you will need for this position • Masters or PhD with 3+ years of experience in bioinformatics, computational biology or related field • 2+ years of experience of building NGS pipelines • 2+ years of Python programming, data visualization, ability to read and modify other peoples source code • Proficiency in Linux, setting up servers, installing packages, bash scripting, etc. • Ability to work independently, prioritize tasks and manage your time productively • Excellent communication skills, including scientific writing Additional Desired Qualifications • Experience with cloud computing (AWS), docker, etc • Proficiency in R • Experience with CWL, WDL • Expertise with front end software development using JavaScript, e.g., React, d3.js, etc. • Familiarity with molecular biology and NGS library preparation techniques • Previous startup and remote work experience is a plus Benefits This is an opportunity to make a significant impact at an early stage startup. Were a small team working closely together to make peoples lives better! Your voice will be heard and you will have the autonomy to set your vision. We strongly encourage ongoing learning to be the best in your position. We provide a competitive salary, meaningful equity, excellent healthcare and other benefits. While half the team works out of our New York office, we are a remote-friendly company. We want to hire the best talent, and people who work at Basepair can live and work from anywhere they want

Bioinformatics Analyst

Florida
2022/05/28.

The Sylvester Comprehensive Cancer Center & the Department of Molecular and Cellular Pharmacology are actively seeking a full-time Bioinformatics Analyst to work on the UHealth campus. The Bioinformatics Analyst will design, build, and maintain bioinformatic pipelines and tools and integrate them with Sylvester’s internal end-user data analytics platform. The candidate will be performing their... activities within an interdisciplinary team of research scientists, data engineers and full-stack developers and will be using state-of-the-art software development practices. The ideal candidate should have a passion for data science and be comfortable with building production-ready solutions that will enhance the research activities of the university’s members. Responsibilities • Develop and maintain production pipelines for analyzing high-throughput NGS data: (e.g. bulk/single-cell RNA-seq, WGS/WES, ATAC-seq) • Develop visualization and computational tools for the exploration and analysis of large scale multi-omic datasets • Integrate algorithms and pipelines with Sylvester’s internal end-user data analytics platform • Write standard operating procedures and other relevant documentation Requirements • Bachelor's degree, or MS in bioinformatics, computational biology, statistics, data science, computer science, or a related field, or equivalent practical experience • Fluency in R or python and Unix (bash) • Experience with NGS data analysis, using common bioinformatics tools (BWA, STAR, Picard, GATK etc.) • Experience using bioinformatics workflow management systems (e.g. Cromwell) and pipeline workflow languages (e.g. WDL) • Familiarity with version control (Git) • Highly motivated, strong work ethic, and able to work independently and with a team • Excellent skills in communication, organization, and time management Preferred Qualifications • 1 – 2 years experience in bioinformatics • Experience developing and implementing scalable data management and infrastructure • Experience with Cloud Computing Environments (e.g. Azure) • Familiarity with relational (e.g. PostgreSQL) and/or NoSQL databases (e.g. MongoDB) • Familiarity with container technologies (e.g. Docker

Bioinformatics Systems Scientist

Fort Lauderdale, FL
2022/05/28.

The Gateway Institute for Brain Research is looking for a Computational Systems Biologist hire to help drive the biological understanding of neurological diseases. The position will support Gateway’s in vitro and in vivo experimentation to discover novel genetic modifiers, small molecules, biologics, and potential therapeutic targets for use in Parkinson’s Disease. Responsibilities... • Creation of computational pathway models built from external as well as internal data. • Analysis of gene expression data and scaling of information results to understand what molecular events are taking place in both diseased as well as normal tissue. • Creation and utilization of data visualization approaches for relaying analysis findings • Partner with Disease area biology experts in project teams • Actively communicate results, experiment design and outcomes to colleagues Required Qualifications • Requires MS or PhD. degree in biology, chemistry, computer science, physics or other relevant science • 2+ years of General experience in the field; laboratory and related research experience a plus. • Must possess computer programming skills, mathematical, instrumentation, interpersonal, communication, and documentation skills. Skills in R, Python, or Matlab. • Ability to give and follow written and oral instructions; ability to communicate effectively with others; ability to react and perform in scientific situations; ability to exercise analytical judgment on work to be done and meet job demands. • Must exhibit a solid understanding of computational approaches Salary Based On Experience And Scientific Skills 401K, Dental, Health, Vision - Available three months after employment Job Type: Full-time

Bioinformatics Analyst - Molecular & Cellular Pharmacology

Miami, FL
2022/05/28.

Current Employees: If you are a current Staff, Faculty or Temporary employee at the University of Miami, please click here to log in to Workday to use the internal application process. To learn how to apply for a faculty or staff position using the Career worklet, please review this tip sheet... Transforming Lives The University of Miami is among the top research universities and academic medical centers in the nation, and one of the largest private employers in South Florida. With more than 16,000 faculty and staff, the University strives for excellence, and is driven by a powerful mission to transform and impact the lives of its students, patients, members of the community, and people across the globe. The University is committed to fostering a culture of belonging, where everyone feels valued and has the opportunity to add value. Through values of Diversity, Integrity, Responsibility, Excellence, Compassion, Creativity, and Teamwork (DIRECCT) the U community works together to create an environment driven by purpose, excellence, community, and service. The Department of Molecular & Cellular Pharmacology has an exciting opportunity for a Full Time Bioinformatics Analyst. The Bioinformatics Analyst works with research staff to extend capabilities in bioinformatics and improve understanding of genetic variation in human health and disease. The Bioinformatics Analyst maintains and performs analysis with existing pipelines while assisting and benchmarking the development of novel methods. Maintain and expand current computational infrastructure of Sylvester’s internal end-user data analytics platform. Monitors system logs and activity on both the on-premise and cloud-based computational infrastructure of the platform. Design, manage, and maintain tools to streamline operational processes. Oversee key elements of the platform’s data and software infrastructure. Researches, installs, and tests software updates and patches to support applications and various operating systems. Provides scripting and programming support to Sylvester’s internal end-user data analytics platform. Runs and maintains existing next generation data analysis pipelines. Assists senior bioinformatics analysts in pipeline and algorithm development and validation. Extracts features of interest from data relating to specific biological questions. Contributes to the maintenance of genomic and clinical databases. Performs statistical and integrative data analysis on genomics and clinical data. Works along-side other team members and data analysts. Follows standard operating procedures, documentation, and scripts to generate reports. Adheres to University and unit-level policies and procedures and safeguards University assets. Department Specific Responsibilities • Develop and maintain production pipelines for analyzing high-throughput NGS data: (e.g. bulk/single-cell RNA-seq, WGS/WES, ATAC-seq) • Develop visualization and computational tools for the exploration and analysis of large scale multi-omic datasets • Integrate algorithms and pipelines with Sylvester’s internal end-user data analytics platform • Write standard operating procedures and other relevant documentation • Runs and maintains existing next generation data analysis pipelines. • Assists senior bioinformatics analysts in pipeline and algorithm development and validation. • Extracts features of interest from data relating to specific biological questions. • Contributes to the maintenance of genomic and clinical databases. • Performs statistical and integrative data analysis on genomics and clinical data. • Works along-side other team members and data analysts. • Follows standard operating procedures, documentation, and scripts to generate reports. • Adheres to University and unit-level policies and procedures and safeguards University assets. This list of duties and responsibilities is not intended to be all-inclusive and may be expanded to include other duties or responsibilities as necessary. Core Qualifications Education: Bachelor’s Degree in Bioinformatics, computational biology, statistics, data science, computer science, or a related field or 7 years of equivalent work experience in relevant technical domain or Associate’s Degree and 4 years of equivalent engineering work experience in relevant technical domain Experience: Required: • Minimum of 1 year of experience • Fluency in R or python and Unix (bash) • Experience with NGS data analysis, using common bioinformatics tools (BWA, STAR, Picard, GATK etc.) • Experience using bioinformatics workflow management systems (e.g. Cromwell) and pipeline workflow languages (e.g. WDL) • Familiarity with version control (Git) Preferred: • 1 – 2 years experience in bioinformatics • Experience developing and implementing scalable data management and infrastructure • Experience with Cloud Computing Environments (e.g. Azure) • Familiarity with relational (e.g. PostgreSQL) and/or NoSQL databases (e.g. MongoDB) • Familiarity with container technologies (e.g. Docker) • Familiarity with machine learning frameworks (e.g. Scikit-learn, Tensorflow), developing and deploying machine learning models Knowledge, Skills and Attitudes: • Ability to analyze, organize and prioritize work under pressure while meeting deadlines • Ability to work independently and/or in a collaborative environment • Skill in collecting, organizing, and analyzing data • Ability to recognize, analyze, and solve a variety of problems • Ability to exercise sound judgment in making critical decisions • Ability to process and handle confidential information with discretion • Proficiency in computer software #LN-AL1 The University of Miami offers competitive salaries and a comprehensive benefits package including medical, dental, tuition remission and more. UHealth-University of Miami Health System, South Florida's only university-based health system, provides leading-edge patient care powered by the ground breaking research and medical education at the Miller School of Medicine. As an academic medical center, we are proud to serve South Florida, Latin America and the Caribbean. Our physicians represent more than 100 specialties and sub-specialties, and have more than one million patient encounters each year. Our tradition of excellence has earned worldwide recognition for outstanding teaching, research and patient care. We're the challenge you've been looking for. Patient safety is a top priority. As a result, during the Influenza ("the flu") season (September through April), the University Of Miami Miller School Of Medicine requires all employees who provide ongoing services to patients, work in a location (all Hospitals and clinics) where patient care is provided, or work in patient care or clinical care areas, to have an annual influenza vaccination. Failure to meet this requirement will result in rescinding or termination of employment. The University of Miami is an Equal Opportunity Employer - Females/Minorities/Protected Veterans/Individuals with Disabilities are encouraged to apply. Applicants and employees are protected from discrimination based on certain categories protected by Federal law. Click here for additional information. Job Status: Full time Employee Type: Staff Pay Grade: r7

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