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More Bioinformatics Jobs

Bioinformatics Scientist

Anywhere
2021/12/25.

Named by Rock Health as the Best Digital Health Company to Work For , Color is a leading healthcare technology company. Color is building and delivering technology-enabled healthcare to millions of people. Through partnerships with public and private partners including governments, employers and health systems, Color’s infrastructure and software enables large populations to receive essential... healthcare services directly where they live or work. This includes testing and telehealth services for preventive health and infectious disease management. Since March 2020, Color has mobilized to address the pandemic by leveraging its platform to scale COVID-19 testing programs around the country. Color’s platform is used by more than 100 major employers, universities and public health institutions, such as the City of San Francisco, the State of California and PerkinElmer, community-based efforts in Oakland, and others, to deliver critical health programs. For more information about Color and its response to COVID-19, visit www.color.com . By investing in the technology that ensures easy and affordable access to healthcare, Color is creating the infrastructure that will serve us for decades to come. Apply to join Color and do some of the most important work of your career. If you are not sure that you're 100% qualified, but are up for the challenge - we want you to apply! The Bioinformatics team at Color is composed of folks with diverse previous experience in next generation sequencing (NGS) technologies, genomics, big data, cloud computing and machine learning. We are responsible for building the clinical NGS analysis pipeline, identifying novel classes of genomic variation, building tools for genomic interpretation and collaborating with R&D lab scientists to bring new products to market. As Color expands our genomics platform in new and exciting directions, we are continuing to bring on top talent in bioinformatics. We are seeking a strong scientist with deep experience in genetics, bioinformatics, and NGS technology to grow this team. Ideal candidates will bring expertise, humility and a strong intellectual curiosity to our overall mission of democratizing access to genetic information. How You’ll Contribute • Generate and pursue novel ideas for genetic testing. • Introduce and incorporate emerging computational methodologies in our bioinformatics codebase. • Collaborate with laboratory scientists and data scientists to translate R&D work to clinical production analyses. • Act as domain expert both for internal and external collaborations. • Assist in troubleshooting with our high-throughput clinical laboratory. Our Ideal Candidate Will Have • You have 5+ years of experience as a bioinformatics scientist or computational biologist (or equivalent role). • You are intimately familiar with standard bioinformatics tools (BWA, GATK, DeepVariant, etc.) and have experience working with advanced bioinformatics concepts such as graph alignment, genotyping of complex haplotypes, etc. • Intermediate proficiency in Python is required. You maintain a high bar for quality of code and work aggressively to eliminate unnecessary duplication and awkward workarounds. • You understand how to evaluate scientific publications/presentations in terms of underlying challenges and potential impact. • You effectively communicate technical information to both technical and non-technical collaborators: you identify core challenges in complex situations, explain trade offs, and incorporate feedback to make decisions using code reviews, docs, wikis, meetings, and other channels as needed. Nice To Have • You have analyzed large sequencing datasets to identify variants across the full spectrum of size and complexity (SNV/indel, CNV, inversions, mobile element insertions, haplotypes). • You are familiar with a variety of sequencing platforms: short-read SBS, linked-read, long-read, optical mapping, etc. • You have experience shipping code in a clinical production environment (GitHub). • You are familiar with high performance and distributed computing systems (AWS, GCP). • You have experience running pipelines using workflow engines such as Toil and workflow languages such as CWL or WDL. • You have successfully employed relevant concepts from data science (machine learning, imputation, etc.) on biological data. • You are familiar with CAP and CLIA guidelines. • You understand the key concepts in pharmacogenomics. Possible Projects To Contribute To • Define our next clinical product and generate proof-of-concept data. • Adopt algorithms that enable extracting additional actionable clinical insights from sequencing data. • Drive our scientific progress as a domain expert, with internal and external collaborators. • Create a basic bioinformatics pipeline to evaluate a novel sequencing platform. Color is an equal opportunity employer. In accordance with anti-discrimination law, it is the purpose of this policy to effectuate these principles and mandates. Color prohibits discrimination and harassment of any type and affords equal employment opportunities to employees and applicants without regard to race, color, religion, sex, national origin, disability status, protected veteran status, or any other characteristic protected by law. Color conforms to the spirit as well as to the letter of all applicable laws and regulations. COVID-19 Vaccination Requirement: Color requires anyone working onsite or visiting Color’s offices to confirm they are fully vaccinated against COVID-19 unless a medical or religious accommodation is timely requested and approved. Please reach out if you have questions or concerns about this policy and how it may apply to your candidacy for a role with Color

Senior Instructor

Aurora, CO
2021/12/25.

• *Description** • *University of Colorado - School of Medicine** • *Department of Immunology and Microbiology and... • *University of Colorado Comprehensive Cancer Center** • *Bioinformatics Senior Instructor** The University of Colorado has a requirement for COVID-19 vaccinations and full completion thereof by 9/1/21 or upon start date. Information regarding this requirement, and exemptions can be found at: Anschutz: https://www.ucdenver.edu/docs/librariesprovider284/default-document-libr... Denver: https://www.ucdenver.edu/coronavirus Exemptions vary by campus location/department. Campus/Unit-Specific Exemptions: + Anschutz Campus - Exemptions are allowed for medical or religious reasons. + Denver Campus - Exemptions are allowed for medical, religious, or personal reasons. + Consolidated/Central Services Administration - Will follow Anschutz policy on exemptions. The University of Colorado Denver seeks individuals with demonstrated commitment to creating an inclusive learning and working environment. We value the ability to engage effectively with students, faculty and staff of diverse backgrounds The University of Colorado Denver l Anschutz Medical Campus seeks individuals with demonstrated commitment to creating an inclusive learning and working environment. We value the ability to engage effectively with students, faculty and staff of diverse backgrounds. The University of Colorado Comprehensive Cancer Center (UCCC) and Immunology and Microbiology Department is seeking a Masters-level Bioinformatics researcher that specializes in analysis of -omics data. The ideal candidate will have a strong track record, as demonstrated through publications and experience, in the analysis and interpretation of -omics data. Additionally, a demonstrated track record of algorithm development with strong programming skills, using R, python or similar languages, along with implementing next generation sequencing data processing pipelines. This position will specialize in informatics expertise on both bulk sequencing and single cell technologies at the DNA, and RNA level, with some support for the additional technologies found below. Experience or interest in 16s bacterial genomics would be an additional asset. Finally, the ideal candidate will have a desire to collaborate with and train laboratory personnel from the Department of Immunology and Microbiology to both develop Bioinformatics analysis plans around their research topics and then to execute on those plans. This position is highly collaborative with opportunities to collaborate with Immunology and Microbiology and UCCC members and to develop the analysis tools needed. This position will be dedicated to research and working on projects through the UCCC Biostatistics and Bioinformatics shared resource for the Immunology and Microbiology Department. The UCCC is the top-ranked NCI-designated comprehensive cancer center in the mountain region of the United States. The UCCC has a membership of 230 faculty that span research from basic cancer biology to epidemiology and cancer prevention. The University has made major investments into centralizing patient medical records for research purposes, bringing in cutting edge single cell technologies at the protein, DNA, and RNA level (10x Genomics, VECTRA, MIBI, mass spectrometry, high content microscopy), made major investments in to building research programs in Immuno-oncology, data analytics, RNA biosciences, and Fibrosis. The UCCC is committed to developing cutting edge basic research and translating these findings into the clinic. With 15 shared resources, including Genomics, Functional Genomics, Proteomics/Metabolomics and Biostatistics and Bioinformatics, The UCCC offers cutting edge resources to its members. This position will be fully supported by the Immunology and Microbiology Department through the UCCC with generous salary compensation commensurate with the qualifications of the individual. • *Responsibilities** : • Analysis of -omics datasets through the Biostatistics and Bioinformatics shared resource, with a focus on next generation sequencing data, particularly for whole genome and whole exome data • Develop collaborative relationships with Immunology and Microbiology Department and UCCC members • Development and implementation of algorithms for the analysis of -omics data • Consultation and assistance with research design and analysis, including data display and graphical representation. • Writing and reviewing of grants and manuscripts • Contribute to teaching needs of the Department and the School, particularly as related to bioinformatics training for Immunologists and Microbiologists, including, but not limited to, developing course materials, delivering lectures, serving as a course director, and providing one-on-one instruction to a variety of learners • Ongoing analysis of Departmental needs in bioinformatics analysis and training, with team input into growth plans Salary and Benefits The salary range (or hiring range) has been established at $100,000 to $105,000 The salary of the finalist(s) selected for this role will be set based on a variety of factors, including but not limited to, internal equity, experience, education, specialty and training. The above salary range ( _or hiring range_ ) represents the University's good faith and reasonable estimate of the range of possible compensation at the time of posting. The University of Colorado offers a full benefits package. Information on University benefits programs, including eligibility, is located at Employee Services . University of Colorado Denver | Anschutz Medical Campus is dedicated to ensuring a safe and secure environment for our faculty, staff, students and visitors. To assist in achieving that goal, we conduct background checks for all new employees prior to their employment. The Immigration Reform and Control Act requires that verification of employment eligibility be documented for all new employees by the end of the third day of work. Alternative formats of this ad are available upon request for persons with disabilities. Your total compensation goes beyond the number on your paycheck. The University of Colorado provides generous leave, health plans and retirement contributions that add to your bottom line Benefits: https://www.cu.edu/employee-services/benefits . Total Compensation Calculator: https://www.cu.edu/employee-services/total-compensation • *Diversity and Equity:** Please click here for information on disability accommodations: https://www1.ucdenver.edu/offices/human-resources/employee-relations-per... Office of Equity: https://www1.ucdenver.edu/offices/equity The University of Colorado Denver | Anschutz Medical Campus is committed to recruiting and supporting a diverse student body, faculty and administrative staff. The university strives to promote a culture of inclusiveness, respect, communication and understanding. We encourage applications from women, ethnic minorities, persons with disabilities and all veterans. The University of Colorado is committed to diversity and equality in education and employment. • *Qualifications** • *Minimum Qualifications:** + A PhD or equivalent experience in Bioinformatics/Biostatistics/Computational Biology or related fields. + Applicants must meet minimum qualifications at the time of hire. • *Perferred** **qualifications:** • Interest in developing new algorithms for new technologies, such as single cell technologies • Experience with developing and writing grant applications or parts of grant applications around Bioinformatics analysis • A track record in analysis of other -omic datasets • An interest in Immunology and Microbiology research and Bioinformatics approaches critical to the field • A commitment to training and education in bioinformatics within the Department and the School • Demonstrated track record in the Bioinformatics/Computational Biology/Mathematical Modeling space through peer-reviewed publications and experience. • A deep understanding of NGS technologies and ability to develop the pipelines to process and analyze the associated data. • Code-base that is managed through a software versioning system (e.g., GitHub) • A track record in cancer research and/or infectious disease research • A desire and track record for training others in use of existing Bioinformatics tools and pipelines • Programming in R along with another language (e.g., python) • *Knowledge, Skills and Abilities:** + Excellent communication and interpersonal skills + A desire to work collaboratively with multiple researchers in the cancer and immunology space _Applicants must meet minimum qualifications at the time of hire._ • *Job:** Faculty • *Primary Location:** Aurora • *Job Category** Faculty • *Department** U0001 -- DENVER & ANSCHUTZ MED CAMPUS • *Schedule** Full-time • *Posting Date** Oct 26, 2021 • *Unposting Date** Ongoing • *Posting Contact Name** Brooke Lydick • *Posting Contact Email** adrianne.lydick@cuanschutz.edu • *Posting Number** 00790543 • *Req ID:** 23357 The University of Colorado does not discriminate on the basis of race, color, national origin, sex, age, pregnancy, disability, creed, religion, sexual orientation, gender identity, gender expression, veteran status, political affiliation, or political philosophy. All qualified individuals are encouraged to apply

Bioinformatics Developer

Aurora, CO
2021/12/25.

University of Colorado Anschutz Medical Campus Cancer Center Professional Research Assistant/Sr. Professional Research Assistant Software Developer Position 692724 * * The University of Colorado Denver l Anschutz Medical Campus seeks individuals with demonstrated commitment to creating an inclusive learning and working environment. We value the ability to engage effectively with students, faculty and staff of diverse backgrounds. The University of Colorado Comprehensive Cancer Center (UCCC) is seeking a software developer to produce bioinformatics analysis tools that make large-scale datasets accessible and usable by basic and clinical research scientists. Our mission is to develop and provide novel, user-friendly, and interactive tools to encourage and empower researchers to explore their own data. This position will collaborate with analysts and faculty in the Biostatistics and Bioinformatics Shared Resource (BBSR), as well as basic and clinical researchers across the Anschutz... Medical Campus, to identify bottlenecks in data analysis workflows. Under the guidance of the BBSR, the developer will design, build, and deploy software solutions to these areas. The candidate should have a proven track record in software development, particularly in R and/or python, and have current knowledge of or interest in biomedical research to fully understand the needs and bottlenecks of data analysis. The UCCC is the top-ranked NCI-designated comprehensive cancer center in the Rocky mountain region of the United States. The UCCC has a membership of 230 faculty that span research from basic cancer biology to epidemiology and cancer prevention. The University has made major investments into centralizing patient medical records for research purposes, bringing in cutting edge single cell technologies at the protein, DNA, and RNA level (10x Genomics, VECTRA, MIBI, mass spectrometry, high content microscopy), made major investments in to building research programs in Immuno-oncology, data analytics, RNA biosciences, and fibrosis. The UCCC is committed to developing cutting edge basic research and translating these findings into the clinic. With 12 shared resources, including Genomics, Functional Genomics, Proteomics/Metabolomics and Biostatistics and Bioinformatics, The UCCC offers cutting edge resources to its members. Examples of Work Performed Collaborate with a team to understand researcher goals in a specific bioinformatics experiment and analysis Understand and work with the data generated in a bioinformatics analysis pipeline Adapt an analysis workflow to design and build effective and generalizable software Identify and develop creative alternative analysis of the data Implement visualization approaches to make data more accessible to researchers Iterate over the software to continue to meet the demands of researchers Salary and Benefits: Salary is commensurate with skills and experience. The University of Colorado offers a full benefits package. Information on University benefits programs, including eligibility, is located at Employee Services. This position falls into the salary range depending on qualifications: $60,000-$90,000 University of Colorado Denver | Anschutz Medical Campus is dedicated to ensuring a safe and secure environment for our faculty, staff, students and visitors. To assist in achieving that goal, we conduct background checks for all new employees prior to their employment. The Immigration Reform and Control Act requires that verification of employment eligibility be documented for all new employees by the end of the third day of work. Alternative formats of this ad are available upon request for persons with disabilities. Your total compensation goes beyond the number on your paycheck. The University of Colorado provides generous leave, health plans and retirement contributions that add to your bottom line. Benefits:https://www.cu.edu/employee-services/benefits. Total Compensation Calculator:https://www.cu.edu/employee-services/total-compensation ** Minimum Qualifications for PRA A Bachelor’s degree in Bioinformatics, Computational Biology, Computer Science, Biostatistics, Biology, or related field A demonstrated history of at least 1 year of developing software or programming tools Advanced knowledge of the R programming language Minimum Qualifications for Sr. PRA A Master’s degree in Bioinformatics, Computational Biology, Computer Science, Biostatistics, Biology, or related field A demonstrated history of at least 1 year of developing software or programming tools Advanced knowledge of the R programming language Preferred Qualifications Working knowledge of biology Ability to code in multiple languages and transfer analysis pipelines across languages Ability to multitask projects Experience with any of the following: o Performing bioinformatics analyses o R shiny environment o Data analysis and visualization o Web development o Version control, GitHub o High Performance Computing clusters Knowledge/Skills Ability to manage and work with big data, preferably bioinformatics-related data Strong critical thinking and analytical skills Ability to communicate in a multi-disciplinary conversation, including simplifying and explaining complex software concepts and principles to biologists and bioinformaticists Strong presentation skills Great written documentation of tool development A positive attitude Ability to work both independently and as a part of a collaborative team Strong customer service skills * Job: *Faculty Organization: *U0001 -- DENVER & ANSCHUTZ MED CAMPUS Title: Bioinformatics Developer Location: Aurora Requisition ID: 17923

Bioinformatics Applications Scientist II #VICON2021

Centennial, CO
2021/12/25.

Description: Bioinformatics Applications Scientist II: Support life sciences applications in biomechanics including movement analysis for use in clinical & research settings. Required BA degree + 24 months experience.

Research Associate - Omics and Biostatistics

Aurora, CO
2021/12/25.

Team Science Faculty Position-‘omics/bioinformatics ... The Department of Biostatistics and Informatics along with its partner Center, the Center for Innovative Design and Analysis (CIDA), are actively recruiting team science faculty positions to meet the demands of a thriving medical and public health research enterprise. In addition, we serve as the cornerstone to a pediatric hospital, adult hospital, and the VA. These individuals will join a growing group of Master’s and Doctoral trained collaborative and consulting biostatisticians. We are currently Ph.D. level positions within the Center. The work for these positions is largely conducted through CIDA and split between the Center’s consulting center and major collaborative research groups. The faculty in CIDA collaborate with health researchers from nearly every School and Department at CU Anschutz on their biomedical and health research projects. The collaborative work for these positions is split between the Center for Innovative Design and Analysis (CIDA) consulting branch and major collaborative research groups. CIDA is a campus-wide analytics Center charged with expanding the analytics expertise and research for the Anschutz Medical Campus. CIDA is hiring multiple positions including a Research Associate General Biostatistician, Research Associate Data Science, and Research Associate ‘Omics. The expertise desired across these positions is biostatistics and bioinformatics, data science, and in the design and analysis of various ‘omics platforms (i.e. analysis of high throughput data). Individuals will have the opportunity to work on a range of projects and data types and implement innovative analyses. CIDA and the Department of Biostatistics offer mentoring and support to all new employees. If an applicant is in the process of obtaining a degree and feel the position is a good fit for their skills and area of interest, please apply. Applicants will need to meet the minimum qualifications upon start date. Those finishing their degrees by the end of the summer are welcome to apply. All applications and applicants are welcome. To be considered, all applications and materials must be submitted through the CU website. To apply please follow the link to the CU website: · Research Associate: OMICS Biostatistician https://cu.taleo.net/careersection/2/jobdetail.ftl?job=23401&lang=en · Research Associate: General Biostatistician https://cu.taleo.net/careersection/2/jobdetail.ftl?job=23404&lang=en Thank you for your interest with the Center for Innovative Design and Analysis at the University of Colorado Anschutz

Bioinformatics - Software Engineer Professional

Aurora, CO
2021/12/25.

Why Work at Children's.... Here, it’s different. Come join us... Children's Hospital Colorado has defined and delivered pediatric healthcare excellence for more than 100 years. Here, the nation’s brightest nurses, physicians, scientists, researchers, therapists and care providers are creating the future of child health. With an optimist’s outlook, a trailblazing spirit and a celebrated history, we’re making new strides every day. We’ve been Magnet-designated four times by the American Nurses Credentialing Center and are consistently recognized among the nation’s top 10 pediatric hospitals by U.S. News & World Report . As a national leader in pediatric care, we serve children and families from all over the nation. Our System of Care includes four pediatric hospitals, 12 specialty care centers, 400+ outreach clinics and 7,000 healthcare professionals representing the full spectrum of pediatric care specialties. We need your expertise. A career at Children's Colorado will challenge you, inspire you, and motivate you to make a difference in the life of a child. Here, it’s different. Do you have what it takes? Additional Information Department: Precision Diagnostic PDX Lab Hours per week: 40, eligible for benefits Shift: Weekdays Monday - Friday 8 AM - 5 PM Potential weekend support of clinical production environments on a as needed bases This position has potential for full time remote employment if applicant is located within Children’s Hospital Colorado’s hiring region. For applicants outside of this hiring region relocation packages are available. Job Overview As a Bioinformatic Software Engineer at Children’s Hospital Colorado, you will be a key member of the Precision Diagnostics team, PDx, with the opportunity to develop the labs’ genomics analysis pipeline. PDx offers both oncology and germline testing thus this position will be responsible for full design, optimization, validation, and operational support of application specific algorithms to meet the varying testing needs. Duties will include creating novel computational approaches and analytical tools as well as adapting pre-existing processes for large scale analysis of genomic sequence data for both clinical and research purposes. Working knowledge of manipulating publicly accessible, commercial and/or proprietary databases is essential as well as creating user interfaces to bioinformatics software and computational tools for clinical based activities. As the subject matter expert, it will be expected that this role provides technical direction to both scientific and technical personnel as well as provides the necessary training for the different user groups. Specialty Areas: Proven development experience with at least one object-oriented programming language (Python, C++, Pascal or other), Experience developing algorithms processing next-generation sequencing (NGS) data, Proficiency with relational databases and UNIX environment. Duties & Responsibilities An employee in this position may be called upon to do any or all of the following essential functions. These examples do not include all of the functions which the employee may be expected to perform. • Develop and maintain NGS algorithms, analytical mechanisms, and modules of bioinformatics pipelines, while improving speed, accuracy, and automation. • Prepares time lines, project plans and flow charts for the development or enhancement of new and existing genomics applications. • Partners with the scientific team to optimize and validate new analytical tools and processes. • Provides recommendations regarding configuration, design, usability and maintainability for applications, interfaces and other dependencies that integrate with platforms. • Gathers, analyzes and documents complex clinical and user requirements, functional requirements and data specifications. Designs, writes and documents technical specifications to design or redesign complex applications. • Collaborates with applications staff and users of information systems to evaluate, plan, design, develop, test, implement, and maintain application development efforts and/or reports. • Recommends, leads and creates peripheral technologies and IT processes in support of application platforms. • Recommends, develops, documents and maintains software coding and development standards, principles and practices. • Serves as a technical resource for modeling, simulation and analysis efforts. Verifies program logic by overseeing the preparation of test data, testing and debugging of programs. Responsibilities POPULATION SPECIFIC CARE • No direct patient care. Essential Functions An employee in this position may be called upon to do any or all of the following essential functions. These examples do not include all of the functions which the employee may be expected to perform. • Analyzes, designs, builds, modifies, implements, tests and debugs new or existing software applications, architectures, databases, and systems integration to automate business processes, as applicable. • Prepares time lines, project plans and flow charts for the development or enhancement of new and existing software application programs. • Gathers, analyzes and documents business and user requirements, functional requirements and data specifications. • Designs, writes and documents technical specifications to design or redesign complex applications. • Collaborates with applications staff and users of information systems to evaluate, plan, design, develop, test, implement, and maintain application development efforts and/or reports. Works with applications staff to translate and document user needs and system requirements into report specification and/or technical documents. Integrates data between multiple systems for reporting as necessary. • Collaborates with database tuning and configuring; developing backup and recovery processes, repeatable methods to refresh non-production environments from production, data life-cycle management, and system upgrades. Writes stored procedures, packages, and functions. • Recommends, develops and creates peripheral technologies and IT processes in support of application platforms. • Recommends, develops, documents and maintains software coding and development standards, principles and practices. • Troubleshoots performance and system availability problems ensuring quality of the enterprise application and/or data warehouse. Consults with end users and information technology staff to identify user problems. • Designs, develops, tests, debugs, implements, and prepares flow charts for both new and existing systems. • Participates in Production Support on-call rotation as necessary. Other Information SCOPE AND LEVEL • Guidelines: Possesses knowledge of and applies the fundamental concepts, practices and procedures within a particular field of specialization. • Complexity: Duties and tasks are varied and somewhat complex, but usually involve limited responsibility. Procedures, methods and techniques to carry out work may not be well defined, requiring greater analysis. • Decision Making: Has some discretion in making some decisions. Decisions and recommendations are made after contemplative analysis and with independent judgment and ingenuity. May escalate the most complex and important decisions to a higher level employee, supervisor and/or manager. • Communication: Communicates explanatory and/or interpretive information relative to the organization and/or own function with team members, peers, management, clients and in limited cases, the public. Uses some discretion and independent judgment when information is exchanged, gathered and/or presented. Defers to higher level team members and/or management in many situations. • Supervision Received: Works under some supervision, conferring with higher level employees, supervisor and/or manager as needed. Qualifications • EDUCATION – Bachelor's degree is required. • Masters’ degree with typically a minimum of 5 years of related experience is preferred • EXPERIENCE – Minimum of three (3) years of related experience is required. • EQUIVALENCY – Combination of post-high school education, job related certification and/or related experience equivalent to seven (7) years may be considered in lieu of minimum requirements. Physical Requirements Ability to Perform Essential Functions of the Job • Vision - Near: clear vision at 20 inches or less • Weight Lifted/Force Exerted: up to 10 pounds/4.5 kilos, up to 1/3 of time • Hearing: able to clearly hear details • Sit: 2/3 or more of time • Talk: able to communicate verbally • Mental/Emotional: able to work in close proximity to others and/or in a distracting environment • Mental/Emotional: able to cope with stress effectively • Mental/Emotional: able to prioritize effectively Work Environment • Mental/Emotional: able to tolerate ambiguity • Mental/Emotional: able to prioritize effectively • Mental/Emotional: may be subject to many interruptions • Office Work Environment: Regular/frequent exposure • Bloodborne Pathogen Category 2: Occasional exposure to blood/body fluid Equal Employment Opportunity It is our intention that all qualified applicants be given equal opportunity and that selection decisions be based on job-related factors. We do not discriminate on the basis of race, color, religion, national origin, sex, age, disability, or any other status protected by law or regulation. Be aware that none of the questions are intended to imply illegal preferences or discrimination based on non-job-related information. Salary Information Annual Salary Range (Based on 40 hours worked per week): $88,100.15 to $132,150.23 Hourly Salary Range: $42.36 to $63.53 Benefits Information As a Children’s Hospital Colorado team member, you will receive a competitive pay and benefits package designed to take care of your needs that includes base pay, incentives, paid time off, medical/dental/vision insurance, company provided life and disability insurance, 403b employer match (retirement savings), and a robust wellness program

Senior Bioinformatics Data Scientist

New York, NY
2021/12/18.

With over 35 nationalities and a range of backgrounds represented in our Benevolent team, we aim to build an inclusive environment where our people can bring their authentic selves to work, be respected for who they are and the exceptional work they do. We welcome and actively encourage applications from all sections of society and are committed to offering equal employment opportunities... regardless of sex, race, religion or belief, ethnic or national origin, marital, domestic or civil partnership status, sexual orientation, gender identity, parental status, disability, age, citizenship, or any other basis. We see our diversity as an asset as we tackle challenging problems that bridge the gap between drug discovery and technology. THE ROLE The Informatics and Data department is focused on applying bioinformatics techniques to drug discovery and precision medicine. We are looking for a talented Senior Bioinformatics Data Scientist to join our target identification team. You will work in a cross-functional team to develop computational methods that leverage the BenevolentAI Knowledge Graph to recommend disease mechanisms, rank targets for experimental test, or assess the various properties of genes/proteins for their suitability as drug targets. You will be part of the wider Informatics team who are the domain experts for biological, chemical, and clinical data at Benevolent and its application to enable drug discovery in our technology platform. PRIMARY RESPONSIBILITIES • Lead the development of scalable computational approaches that leverage the Benevolent Knowledge Graph to recommend disease mechanisms, rank targets with respect to their biological importance, or assess their suitability to progress as drug targets. • Provide domain expertise and disseminate best practices in the processing and application of biomedical data within a multidisciplinary team of data scientists, machine learning specialists and software engineers. • Work together with software engineers to productionise informatics logic and algorithms to power user-facing tools that are applied in BAI drug discovery programmes. • Collaborate and communicate effectively across product, technology, and drug discovery scientific disciplines and functions to achieve BenevolentAI strategic goals. • Contribute towards BenevolentAIs ongoing and future external collaboration activities WE ARE LOOKING FOR SOMEONE WITH • A PhD, or equivalent industrial experience in bioinformatics, statistics or other computational subjects with application to biology. • Proficient programmer in at least one language and able to demonstrate the potential to comfortably work in Python within a few months. • Experience working with and integrating a wide range of biomedical data types and resources that include databases such as OMIM, Reactome, Chembl; technologies such as text mining/NLP; and analysis of primary datasets such as genomics/genetics, protein structure, chemistry, or clinical data. • Experience, preferably in industry, in developing and applying computational methods to derive novel insights from data to support one or more parts of the drug discovery process (e.g. target identification, molecular design, patient stratification). • Familiarity with database and graph technologies such as MySQL and Neo4j. • Excellent communicator, both verbal and written, with an ability to share knowledge and ideas between scientific and engineering disciplines. ABOUT US BenevolentAI unites AI with human expertise to discover new and more effective medicines. Our unique computational R&D platform spans every step of the drug discovery process, powering an in-house pipeline of over 25 drug programmes. We advance our mission to reinvent drug discovery by harnessing the power of a diverse team, rich with different backgrounds, experiences, opinions and personalities. In our offices in London and New York and research facility in Cambridge (UK), we work in highly collaborative, multidisciplinary teams, harnessing skills across biology, chemistry, engineering, AI, machine learning, informatics, precision medicine and drug discovery. We share a passion for being part of a mission that matters, and we are always looking for curious and collaborative people who share our values and want to be part of our journey. If that sounds like a fit for you, hit the apply button and join us. WANT TO DO A LITTLE MORE RESEARCH BEFORE YOU APPLY? Head over to our Glassdoor [ page to learn about our benefits, culture and to find out what our team think about life at Benevolent. You can also find out more about us on LinkedIn [ and Twitter

Bioinformatics Engineer I

New York, NY
2021/12/18.

Job Description Company Overview ... At Memorial Sloan Kettering (MSK), we're not only changing the way we treat cancer, but also the way the world thinks about it. By working together and pushing forward with innovation and discovery, we're driving excellence and improving outcomes. We're treating cancer, one patient at a time. Join us and make a difference every day. MSK requires all new hires, volunteers, and vendors who come onsite to provide proof of COVID-19 vaccination. This is based on the COVID-19 vaccines' high level of protection and our shared responsibility in protecting our patients. Job Details Please submit a short paragraph about training, a recent project, and interest/motivations to be considered. About the Elli Papaemmanuil Lab Our lab is a collective of clinical, computational, molecular and mathematical research investigators with an interest to study the role of acquired mutations in cancer development and how these determine clinical phenotype and response to therapy. Our mission is to execute research that informs and moves clinical practices in oncology forward. We have strong expertise in genome profiling analysis consistent track record on the development of high-throughput laboratory and analytical pipelines (bioinformatics and statistical) and integrate large and complex genomic datasets. We have formed a strong network of research and clinical collaborations, to pursue innovative studies in cancer research. We are looking for a dedicated and motivated Bioinformatics Software Engineer to join our growing team. Our laboratory designs large scale and innovative genomic studies to understand cancer biology and inform cancer patient care. To support our studies, we have built Isabl, a platform for scalable bioinformatics operations designed with a patient-centric data bank connected through an API, a command line interface, and web-based data visualization solutions. We follow principles from Agile development and engineering to build innovative software solutions that allow us to optimize, scale and innovate cancer genomics research output. What you'll do: • As a member of the software engineering team the applicant will be developing new solutions for our bioinformatics operations. • Support the design, development and implementation of data processing workflows for cancer genomic data and related metadata. • Leading the benchmarking of analytical tools, as well as the design, deployment and maintenance of efficient software solutions to automate data analyses. • Will be working closely with computational members in the group to support innovative research and develop prototype software solutions for research and clinical applications. Who you are: • Masters graduate in Computer Engineering, Computer Science or Biomedical Engineer OR at least 2 years of experience in a relevant role. • Proficient skills in Python, or some other scripting languages (JavaScript, Bash, Perl, C++ ). • Good working knowledge of Linux (or similar operating systems), and desired knowledge with HPC or cloud computing environments (e.g. LSF, SLURM, AWS BATCH) • Experience with SQL (Postgres) and/or noSQL (MongoDB, DynamoDB) databases. • Familiarity with software packaging and package distribution standards (Pypi, Docker) • Strong interest in development of documentation for the deployment and operation of software. • Experience with NGS datasets is desirable. • Ability to work independently and as a team depending on tasks. • Strong written and verbal communication skills. Benefits Competitive compensation packages Sick Time Generous Vacation+ 12 holidays to recharge & refuel Internal Career Mobility & Performance Consulting Medical, Dental, Vision, FSA & Dependent Care 403b Retirement Savings Plan Match Tuition Reimbursement Parental Leave & Adoption Assistance Commuter Spending Account Fitness Discounts &Wellness Program Resource Networks Life Insurance & Disability Remote Flexibility We believe in communication, openness, and thinking beyond your 8-hour day @ MSK. It's important to us that you have a sense of impact, community, and work/life balance to be and feel your best. #LI-POST

Computational Biologist - DGIC - lab

New York, NY
2021/12/18.

Description Computational Biology ResearcherMission StatementThrough single-cell biology, computational biology, and artificial intelligence, Immunai is reprogramming the immune system to develop improved drugs and therapeutics.BackgroundImmunai was founded in December 2018. We are a multidisciplinary team of immunologists, genomics technologists, computer scientists, engineers, mathematicians and operators singularly focused on solving an audacious challenge. Backed by some of the leading scientific minds in immunology, oncology, and single cell genomics, we are up for the challenge.Immunai has begun the process of mapping millions of immune cells and their functions in order to build a proprietary data set for clinical immunological data. The immune system mapping will play an important role in boosting R&D efforts in developing targeted therapies for different diseases. The company noted that the immune system consists of trillions of cells that are divided into different cell... types that perform different functions. Because of the complexity of the system, it can be difficult to determine how drugs will interact with the immune cells. This increased understanding can be used to boost clinical response to different cellular therapies.Immunai s mission is to map the immune system with neural networks and transfer learning techniques informed by deep immunology knowledge. We developed the tools and knowhow to help every immuno-oncology and cell therapy researcher excel at their job. This helps increase the speed in which drugs are developed and brought to market by elucidating their mechanisms of action and resistance.Location - New York City, USFor details - www.immunai.com, shlomit@immunai.comResponsibilities&Work as part of an interdisciplinary team of biologists, immunologists, computational biologists, software engineers and ML specialists, aiming to harness single-cell technologists to improve immune-based therapeutics.Contribute to development of algorithms and pipelines for the analysis of multi-omic single-cell data.Contribute to the evaluation of internal and external tools, algorithms and technologies.Contribute to the maintenance and improvements of existing tools and pipelines. Qualifications: &MSc in Computational Biology - MUSTComfortable with developing and testing data analysis code&(R or Python's pandas)- MUSTExperience in large scale data handling (experience with omics data is a strong advantage)-&MUSTKeen interest in biology (knowledge in immunology is a strong advantage)- MUST Desired personal traits: You want to make an impact on humankindYou prioritize We over I You enjoy getting things done - with super high qualityYou collaborate effectively with people of diverse backgrounds and culturesYou have superior skills and experience, and constantly strive to be world-class in what you doYou constantly challenge your own assumptions, pushing for continuous improvementYou have a growth mindsetYou take pride in owning crucial tasks and successfully executing them&No problem is not your problemYou make decisions that favor the company, not yourself or your teamYou strive for excellence, but accept other people s mistakes and failuresYou are candid, authentic and transparentYou are tenacious and optimistic

Scientist, Bioinformatics

Leonia, NJ
2021/12/18.

We're hiring Bioinformatics Scientists with strong backgrounds in database development, management and analysis as they relate to human health and disease biomarkers, with the goal of improving disease prediction and prevention. With ICR, you'll get to... • Design, build, test and refine multiple large biomarker databases in collaboration with multiple ICR teams • Work with biological data analysts to access and improve large databases of health and disease biomarkers for use in predictive analytics and predictive modeling • Conduct complex bioinformatics analyses on large genomic, transcriptomic and epigenetic data from biofluids and cell lines as well as large protein, cfDNA, miRNA and epigenetic datasets • Design and build streamlined pipelines and algorithms for database querying and multiple other applications to support complex dataset analyses Please apply if you have: • An advanced degree in Bioinformatics or Computer Sciences with a focus on database architecture, access and querying • Extensive database architecture experience (e.g. SQL, MySQL, etc) • Extensive programming experience and intimate knowledge of programming languages for statistical analysis • Experience mining, analyzing and exploring genomic, epigenetic, transcriptomic (RNAseq), proteomic, metabolomic, and other -omic datasets Ideally, you'll also have: • Extensive working knowledge of various AI/machine-learning algorithms and their implementation in biological dataset analysis • A solid understanding of and appreciation for Bayesian statistics and methods • Personal interest in using statistics to evaluate disease models and aging biology And you'll need: • Ability to work in the United States without sponsorship • A can-do attitude and a friendly, easygoing personality Salary Starting base pay range: $135,000/yr - $200,000/yr Starting additional compensation range: $10,000/yr - $25,000/yr Starting position title and compensation are commensurate with experience

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